• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

用于生态研究的rRNA直接提取与纯化

Direct extraction and purification of rRNA for ecological studies.

作者信息

Moran M A, Torsvik V L, Torsvik T, Hodson R E

机构信息

Department of Microbiology, University of Georgia, Athens 30602-2605.

出版信息

Appl Environ Microbiol. 1993 Mar;59(3):915-8. doi: 10.1128/aem.59.3.915-918.1993.

DOI:10.1128/aem.59.3.915-918.1993
PMID:7683186
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC202208/
Abstract

Microgram quantities of rRNA were recovered from natural microbial communities in sediment, soil, and water with a lysozyme-hot phenol direct extraction method. Gel filtration with Sephadex G-75 spun columns readily removed humic-like contaminants without any measurable loss of rRNA and rendered RNA extracts of sufficient quality for molecular procedures.

摘要

采用溶菌酶 - 热酚直接提取法,从沉积物、土壤和水中的天然微生物群落中回收了微克量的rRNA。使用Sephadex G - 75旋转柱进行凝胶过滤,能轻松去除类腐殖质污染物,且rRNA没有任何可测量的损失,得到了质量足以用于分子操作的RNA提取物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/700e/202208/748dfc5a5a3f/aem00032-0272-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/700e/202208/d7d2beb18b41/aem00032-0270-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/700e/202208/748dfc5a5a3f/aem00032-0272-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/700e/202208/d7d2beb18b41/aem00032-0270-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/700e/202208/748dfc5a5a3f/aem00032-0272-a.jpg

相似文献

1
Direct extraction and purification of rRNA for ecological studies.用于生态研究的rRNA直接提取与纯化
Appl Environ Microbiol. 1993 Mar;59(3):915-8. doi: 10.1128/aem.59.3.915-918.1993.
2
Direct ribosome isolation from soil to extract bacterial rRNA for community analysis.直接从土壤中分离核糖体以提取细菌rRNA用于群落分析。
Appl Environ Microbiol. 1996 Nov;62(11):4162-7. doi: 10.1128/aem.62.11.4162-4167.1996.
3
Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition.从自然环境中共提取DNA和RNA以分析基于核糖体DNA和rRNA的微生物群落组成的快速方法。
Appl Environ Microbiol. 2000 Dec;66(12):5488-91. doi: 10.1128/AEM.66.12.5488-5491.2000.
4
Identification of novel bacterial lineages as active members of microbial populations in a freshwater sediment using a rapid RNA extraction procedure and RT-PCR.使用快速RNA提取程序和逆转录-聚合酶链反应(RT-PCR)鉴定淡水沉积物中作为微生物群落活跃成员的新型细菌谱系。
Microbiology (Reading). 1999 Aug;145 ( Pt 8):1977-1987. doi: 10.1099/13500872-145-8-1977.
5
Evaluation of extraction and purification methods for obtaining PCR-amplifiable DNA from compost for microbial community analysis.用于从堆肥中获取可用于微生物群落分析的PCR扩增DNA的提取和纯化方法的评估。
J Microbiol Methods. 2002 May;49(3):255-64. doi: 10.1016/s0167-7012(01)00377-3.
6
Isolation and characterization of colicin fragments of bacterial 16S ribosomal RNA.细菌16S核糖体RNA的大肠杆菌素片段的分离与鉴定
Methods Enzymol. 1988;164:188-200. doi: 10.1016/s0076-6879(88)64043-2.
7
Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients.通过等密度离心梯度的分级分离和定量分析提高基于DNA和rRNA的稳定同位素探测的灵敏度。
Environ Microbiol. 2004 Jan;6(1):73-8. doi: 10.1046/j.1462-2920.2003.00536.x.
8
Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis.环境样品中微生物多样性的测定:基于PCR的rRNA分析的陷阱
FEMS Microbiol Rev. 1997 Nov;21(3):213-29. doi: 10.1111/j.1574-6976.1997.tb00351.x.
9
DNA extraction for 16S rRNA gene analysis to determine genetic diversity in deep sediment communities.提取DNA用于16S rRNA基因分析,以确定深层沉积物群落中的遗传多样性。
FEMS Microbiol Lett. 1992 Dec 15;100(1-3):59-65. doi: 10.1111/j.1574-6968.1992.tb14019.x.
10
Bacterial mRNA purification by magnetic capture-hybridization method.
Microbiol Immunol. 2004;48(2):91-6. doi: 10.1111/j.1348-0421.2004.tb03493.x.

引用本文的文献

1
Estimates of Soil Bacterial Ribosome Content and Diversity Are Significantly Affected by the Nucleic Acid Extraction Method Employed.所采用的核酸提取方法对土壤细菌核糖体含量和多样性的估计有显著影响。
Appl Environ Microbiol. 2016 Apr 18;82(9):2595-2607. doi: 10.1128/AEM.00019-16. Print 2016 May.
2
Extraction of bacterial RNA from soil: challenges and solutions.从土壤中提取细菌 RNA:挑战与解决方案。
Microbes Environ. 2012;27(2):111-21. doi: 10.1264/jsme2.me11304.
3
An efficient RNA extraction method for estimating gut microbial diversity by polymerase chain reaction.

本文引用的文献

1
Rapid method for direct extraction of mRNA from seeded soils.从接种土壤中直接提取 mRNA 的快速方法。
Appl Environ Microbiol. 1991 Mar;57(3):765-8. doi: 10.1128/aem.57.3.765-768.1991.
2
DNA Probe Method for the Detection of Specific Microorganisms in the Soil Bacterial Community.用于检测土壤细菌群落中特定微生物的DNA探针法
Appl Environ Microbiol. 1988 Mar;54(3):703-711. doi: 10.1128/aem.54.3.703-711.1988.
3
Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology.基于系统发育的杂交探针在瘤胃微生物生态学研究中的应用。
一种通过聚合酶链反应估算肠道微生物多样性的高效RNA提取方法。
Curr Microbiol. 2009 May;58(5):464-71. doi: 10.1007/s00284-008-9345-z. Epub 2009 Jan 22.
4
Quantifying expression of a dissimilatory (bi)sulfite reductase gene in petroleum-contaminated marine harbor sediments.定量分析石油污染的海洋港口沉积物中异化(双)亚硫酸盐还原酶基因的表达
Microb Ecol. 2008 Apr;55(3):489-99. doi: 10.1007/s00248-007-9294-2. Epub 2007 Sep 5.
5
A simple, efficient method for the separation of humic substances and DNA from environmental samples.一种从环境样品中分离腐殖质和 DNA 的简单、高效的方法。
Appl Environ Microbiol. 1997 Dec;63(12):4993-5. doi: 10.1128/aem.63.12.4993-4995.1997.
6
Rapid Extraction of DNA and rRNA from Sediments by a Novel Hydroxyapatite Spin-Column Method.一种新型羟基磷灰石离心柱法从沉积物中快速提取 DNA 和 rRNA。
Appl Environ Microbiol. 1996 Oct;62(10):3905-7. doi: 10.1128/aem.62.10.3905-3907.1996.
7
DGGE fragments oscillate with or counter to fluctuations in cultivable bacteria along wheat roots.变性梯度凝胶电泳(DGGE)片段随着可培养细菌沿小麦根系的波动而振荡或与之相反。
Microb Ecol. 2005 Nov;50(4):506-17. doi: 10.1007/s00248-005-0012-7. Epub 2005 Nov 29.
8
Dominant microbial composition and its vertical distribution in saline meromictic Lake Kaiike (Japan) as revealed by quantitative oligonucleotide probe membrane hybridization.通过定量寡核苷酸探针膜杂交揭示日本盐度分层湖凯伊克湖中的优势微生物组成及其垂直分布。
Appl Environ Microbiol. 2004 Aug;70(8):4930-40. doi: 10.1128/AEM.70.8.4930-4940.2004.
9
Sequence-specific cleavage of small-subunit (SSU) rRNA with oligonucleotides and RNase H: a rapid and simple approach to SSU rRNA-based quantitative detection of microorganisms.用寡核苷酸和核糖核酸酶H对小亚基(SSU)核糖体RNA进行序列特异性切割:一种基于SSU核糖体RNA的微生物快速简易定量检测方法。
Appl Environ Microbiol. 2004 Jun;70(6):3650-63. doi: 10.1128/AEM.70.6.3650-3663.2004.
10
Methodologies for the characterization of microbes in industrial environments: a review.工业环境中微生物表征的方法:综述
J Ind Microbiol Biotechnol. 2003 Jun;30(6):327-56. doi: 10.1007/s10295-003-0056-y. Epub 2003 May 23.
Appl Environ Microbiol. 1988 May;54(5):1079-84. doi: 10.1128/aem.54.5.1079-1084.1988.
4
Recovery of DNA from soils and sediments.从土壤和沉积物中提取DNA。
Appl Environ Microbiol. 1988 Dec;54(12):2908-15. doi: 10.1128/aem.54.12.2908-2915.1988.
5
Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells.用于鉴定单个微生物细胞的系统发育组特异性寡脱氧核苷酸探针。
J Bacteriol. 1988 Feb;170(2):720-6. doi: 10.1128/jb.170.2.720-726.1988.
6
Large- and small-scale phenol extractions.
Methods Enzymol. 1987;152:33-41. doi: 10.1016/0076-6879(87)52007-9.
7
Method for blot-hybridization analysis of mRNA molecules from Bacillus subtilis.
Gene. 1987;51(2-3):281-6. doi: 10.1016/0378-1119(87)90317-9.
8
Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations.16S rRNA靶向寡核苷酸探针与流式细胞术相结合用于分析混合微生物群体。
Appl Environ Microbiol. 1990 Jun;56(6):1919-25. doi: 10.1128/aem.56.6.1919-1925.1990.
9
Rapid method for direct extraction of DNA from soil and sediments.从土壤和沉积物中直接提取DNA的快速方法。
Appl Environ Microbiol. 1991 Apr;57(4):1070-4. doi: 10.1128/aem.57.4.1070-1074.1991.
10
Molecular approaches for environmental monitoring of microorganisms.用于微生物环境监测的分子方法。
Biotechniques. 1992 May;12(5):706-17.