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马铃薯线粒体起始甲硫氨酸tRNA基因及其侧翼区域:植物物种间线粒体基因组重排多样性的一个例证

The potato mitochondrial initiator methionine tRNA gene and its flanking regions: an illustration of the diversity of mitochondrial genome rearrangements among plant species.

作者信息

Maréchal-Drouard L, Khamiss O, Dietrich A

机构信息

Institut de Biologie Moléculaire des Plantes du CNRS, Université Louis Pasteur, Strasbourg, France.

出版信息

Plant Mol Biol. 1993 Sep;22(6):1157-61. doi: 10.1007/BF00028985.

DOI:10.1007/BF00028985
PMID:7691207
Abstract

The initiator methionine transfer RNA (tRNA(fMet)) gene was identified on a 347 bp Eco RI-Hind III DNA fragment of the potato mitochondrial (mt) genome. The sequence of this gene shows 1 to 7 nucleotide differences with the other plant mt tRNAs(fMet) or tRNA(fMet) genes studied so far. Whereas the tRNA(fMet) gene is present as a single copy in the potato mt genome, a tRNA 'pseudogene' corresponding to 60% of a complete tRNA (from the 5' end to the variable region) and located at 105 nucleotides upstream of the tRNA(fMet) gene on the opposite strand was shown to be repeated at least three times. Furthermore, the physical environment of the tRNA(fMet) gene in the mt genome is very different among plants, which suggests that the tRNA(fMet) gene region has often been implicated in recombination events of plant mt genomes leading to important rearrangements in gene order.

摘要

起始甲硫氨酸转运RNA(tRNA(fMet))基因是在马铃薯线粒体(mt)基因组的一个347 bp的Eco RI - Hind III DNA片段上鉴定出来的。该基因的序列与迄今为止研究的其他植物线粒体tRNA(fMet)或tRNA(fMet)基因相比,有1至7个核苷酸差异。虽然tRNA(fMet)基因在马铃薯线粒体基因组中以单拷贝形式存在,但在相反链上位于tRNA(fMet)基因上游105个核苷酸处,有一个对应于完整tRNA 60%(从5'端到可变区)的tRNA“假基因”,且该假基因至少重复了三次。此外,线粒体基因组中tRNA(fMet)基因的物理环境在不同植物间差异很大,这表明tRNA(fMet)基因区域常参与植物线粒体基因组的重组事件,导致基因顺序发生重要重排。

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引用本文的文献

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Mol Gen Genet. 1996 Sep 25;252(4):404-11. doi: 10.1007/BF02173005.
2
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Nucleic Acids Res. 1996 Jun 15;24(12):2199-203. doi: 10.1093/nar/24.12.2199.

本文引用的文献

1
Sequences of initiator and elongator methionine tRNAs in bean mitochondria : Localization of the corresponding genes on maize and wheat mitochondrial genomes.豆科线粒体起始和延伸甲硫氨酸 tRNA 序列:相应基因在玉米和小麦线粒体基因组中的定位。
Plant Mol Biol. 1986 Jul;7(4):245-53. doi: 10.1007/BF00752898.
2
Genes for tRNA(Asp), tRNA (Pro), tRNA (Tyr) and two tRNAs (Ser) in wheat mitochondrial DNA.小麦线粒体 DNA 中的 tRNA(Asp)、tRNA(Pro)、tRNA(Tyr)和两个 tRNA(Ser)基因。
Plant Mol Biol. 1988 May;10(3):251-62. doi: 10.1007/BF00027402.
3
Multiple sequence rearrangements accompanying the duplication of a tRNA(Pro) gene in wheat mitochondrial DNA.
小麦线粒体 DNA 中伴随 tRNA(Pro)基因重复的多次序列重排。
Plant Mol Biol. 1988 Nov;11(6):833-43. doi: 10.1007/BF00019523.
4
Identification of two methionine transfer RNA genes in the maize mitochondrial genome.鉴定出玉米线粒体基因组中的两个蛋氨酸转移 RNA 基因。
Plant Physiol. 1984 Dec;76(4):1079-82. doi: 10.1104/pp.76.4.1079.
5
Cytochrome oxidase subunit II gene in mitochondria of Oenothera has no intron.线粒体细胞色素氧化酶亚基 II 基因在月见草中没有内含子。
EMBO J. 1983;2(12):2173-8. doi: 10.1002/j.1460-2075.1983.tb01719.x.
6
A methionine tRNA gene from lupine mitochondria.来自羽扇豆线粒体的一个甲硫氨酸转运RNA基因。
Nucleic Acids Res. 1986 Sep 25;14(18):7508. doi: 10.1093/nar/14.18.7508.
7
Cytochrome oxidase subunit II gene is adjacent to an initiator methionine tRNA gene in soybean mitochondrial DNA.细胞色素氧化酶亚基II基因在大豆线粒体DNA中与起始甲硫氨酸tRNA基因相邻。
Curr Genet. 1987;11(4):287-93. doi: 10.1007/BF00355402.
8
The atp6 coding region has been disrupted and a novel reading frame generated in the mitochondrial genome of cytoplasmic male-sterile radish.在细胞质雄性不育萝卜的线粒体基因组中,atp6编码区已被破坏并产生了一个新的阅读框。
J Biol Chem. 1989 Jul 15;264(20):11706-13.
9
Compilation of tRNA sequences and sequences of tRNA genes.tRNA序列及tRNA基因序列的汇编。
Nucleic Acids Res. 1989;17 Suppl(Suppl):r1-172. doi: 10.1093/nar/17.suppl.r1.
10
Transfer RNAs of potato (Solanum tuberosum) mitochondria have different genetic origins.马铃薯(茄属)线粒体的转运RNA具有不同的遗传起源。
Nucleic Acids Res. 1990 Jul 11;18(13):3689-96. doi: 10.1093/nar/18.13.3689.