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杂交法DNA测序——一种大规模测序方法及诊断工具?

DNA sequencing by hybridization--a megasequencing method and a diagnostic tool?

作者信息

Mirzabekov A D

机构信息

Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow.

出版信息

Trends Biotechnol. 1994 Jan;12(1):27-32. doi: 10.1016/0167-7799(94)90008-6.

DOI:10.1016/0167-7799(94)90008-6
PMID:7764555
Abstract

The length of DNA from different sources that has been sequenced has already exceeded 1 x 10(8) bases, and this figure is continuing to grow exponentially. Even so, the very large quantity of DNA that remains to be sequenced and the impetus generated by the worldwide Human Genome Project has increased the need for the development of megasequencing procedures. Sequencing by hybridization (SbH) shows promise as an approach for developing such a method. The technique involves hybridization of the DNA of unknown sequence with an enormous set of short oligonucleotides; identification and analysis of the overlapping set of oligomers that form perfect duplexes with the DNA of interest permits reconstruction of the target-DNA sequence. Preliminary experiments have already demonstrated the feasibility of incorporating this approach into large-scale sequencing projects, and processes have been developed both for manufacturing the sequencing microchips that incorporate the immobilized oligonucleotides, and for detecting hybridization of the target DNA to these microchips.

摘要

目前已测序的来自不同来源的DNA长度已超过1×10⁸个碱基,而且这一数字还在呈指数级持续增长。即便如此,仍有大量DNA有待测序,再加上全球人类基因组计划所产生的推动力,对大规模测序程序的需求与日俱增。杂交测序法(SbH)有望成为开发此类方法的途径。该技术涉及将未知序列的DNA与大量短寡核苷酸进行杂交;对与目标DNA形成完美双链体的重叠寡聚体集合进行鉴定和分析,从而能够重建目标DNA序列。初步实验已证明将此方法纳入大规模测序项目的可行性,并且已开发出用于制造包含固定化寡核苷酸的测序微芯片以及检测目标DNA与这些微芯片杂交的方法。

相似文献

1
DNA sequencing by hybridization--a megasequencing method and a diagnostic tool?杂交法DNA测序——一种大规模测序方法及诊断工具?
Trends Biotechnol. 1994 Jan;12(1):27-32. doi: 10.1016/0167-7799(94)90008-6.
2
Manual manufacturing of oligonucleotide, DNA, and protein microchips.寡核苷酸、DNA和蛋白质微芯片的手工制造。
Anal Biochem. 1997 Aug 1;250(2):203-11. doi: 10.1006/abio.1997.2209.
3
Enzyme-linked fluorescent detection for automated multiplex DNA sequencing.用于自动化多重DNA测序的酶联荧光检测
Genomics. 1994 Mar 1;20(1):68-74. doi: 10.1006/geno.1994.1128.
4
[Reconstruction of a sequenced sequence using results of stacked hybridization with an oligonucleotide matrix].[使用与寡核苷酸矩阵的堆叠杂交结果对测序序列进行重建]
Mol Biol (Mosk). 1993 Sep-Oct;27(5):1126-38.
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DNA sequencing by hybridization to oligonucleotide matrix. Calculation of continuous stacking hybridization efficiency.通过与寡核苷酸矩阵杂交进行DNA测序。连续堆积杂交效率的计算。
J Biomol Struct Dyn. 1994 Feb;11(4):797-812. doi: 10.1080/07391102.1994.10508033.
6
Likelihood DNA sequencing by hybridization.通过杂交进行似然性DNA测序。
J Biomol Struct Dyn. 1993 Dec;11(3):637-53. doi: 10.1080/07391102.1993.10508020.
7
Multiple hybridization-extension sequencing (MHES) on microarray.微阵列上的多重杂交-延伸测序(MHES)
J Biochem. 2007 Nov;142(5):605-11. doi: 10.1093/jb/mvm166. Epub 2007 Sep 7.
8
Sequencing of pools of nucleic acids on oligonucleotide arrays.在寡核苷酸阵列上对核酸池进行测序。
Biosystems. 1993;30(1-3):215-31. doi: 10.1016/0303-2647(93)90072-k.
9
Dissociation of duplexes formed by hybridization of DNA with gel-immobilized oligonucleotides.DNA与凝胶固定化寡核苷酸杂交形成的双链体的解离。
J Biomol Struct Dyn. 1994 Feb;11(4):783-95. doi: 10.1080/07391102.1994.10508032.
10
Characterizing and sequencing cDNAs using oligonucleotide hybridization.
DNA Seq. 1993;4(3):143-50. doi: 10.3109/10425179309015627.

引用本文的文献

1
Overview of Next-Generation Sequencing Technologies.新一代测序技术概述
Curr Protoc Mol Biol. 2018 Apr;122(1):e59. doi: 10.1002/cpmb.59.
2
Preparation of DNA and protein micro arrays on glass slides coated with an agarose film.在涂有琼脂糖膜的载玻片上制备DNA和蛋白质微阵列。
Nucleic Acids Res. 2000 Jun 15;28(12):E66. doi: 10.1093/nar/28.12.e66.
3
Mutation detection by stacking hybridization on genosensor arrays.基于基因传感器阵列的堆叠杂交进行突变检测。
Mol Biotechnol. 1999 Feb;11(1):13-25. doi: 10.1007/BF02789173.
4
Hybridization of glass-tethered oligonucleotide probes to target strands preannealed with labeled auxiliary oligonucleotides.玻璃连接的寡核苷酸探针与用标记的辅助寡核苷酸预退火的靶链杂交。
Mol Biotechnol. 1999 Feb;11(1):1-12. doi: 10.1007/BF02789172.
5
Parallel thermodynamic analysis of duplexes on oligodeoxyribonucleotide microchips.寡脱氧核糖核苷酸微芯片上双链体的平行热力学分析
Nucleic Acids Res. 1998 Mar 15;26(6):1515-21. doi: 10.1093/nar/26.6.1515.
6
Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology.作为微生物学定性与环境研究基因传感器的寡核苷酸微芯片。
Appl Environ Microbiol. 1997 Jun;63(6):2397-402. doi: 10.1128/aem.63.6.2397-2402.1997.
7
Chemical methods of DNA and RNA fluorescent labeling.DNA和RNA荧光标记的化学方法。
Nucleic Acids Res. 1996 Nov 15;24(22):4535-42. doi: 10.1093/nar/24.22.4535.
8
Theoretical analysis of the kinetics of DNA hybridization with gel-immobilized oligonucleotides.凝胶固定寡核苷酸DNA杂交动力学的理论分析
Biophys J. 1996 Nov;71(5):2795-801. doi: 10.1016/S0006-3495(96)79473-0.
9
Regioselective immobilization of short oligonucleotides to acrylic copolymer gels.短寡核苷酸在丙烯酸共聚物凝胶上的区域选择性固定
Nucleic Acids Res. 1996 Aug 15;24(16):3142-8. doi: 10.1093/nar/24.16.3142.
10
Hybridization of DNA targets to glass-tethered oligonucleotide probes.DNA靶标与玻璃连接的寡核苷酸探针的杂交。
Mol Biotechnol. 1995 Dec;4(3):213-25. doi: 10.1007/BF02779015.