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马疱疹病毒2型的DNA序列

The DNA sequence of equine herpesvirus 2.

作者信息

Telford E A, Watson M S, Aird H C, Perry J, Davison A J

机构信息

Institute of Virology, University of Glasgow, UK.

出版信息

J Mol Biol. 1995 Jun 9;249(3):520-8. doi: 10.1006/jmbi.1995.0314.

DOI:10.1006/jmbi.1995.0314
PMID:7783207
Abstract

The complete DNA sequence of equine herpesvirus 2 (EHV-2) strain 86/67 was determined. The genome is 184,427 bp in size and has a base composition of 57.5% G + C. Unusually for a herpesvirus, about a third of the sequence distributed in several large blocks appears not to encode proteins. The 79 open reading frames that were identified as probably polypeptide-coding are predicted to encode 77 distinct proteins. Amino acid sequence comparisons confirmed that EHV-2 is a gamma-herpesvirus that is genetically collinear with herpesvirus saimiri (HVS; a gamma 2-herpesvirus) and Epstein-Barr virus (EBV; a gamma 1-herpesvirus), with a closer relationship to the former. Moreover, EHV-2 specifies eight proteins that have counterparts in HVS but not in EBV and only a single protein that has a homologue in EBV but not in HVS (EBV BCRF1, which encodes an interleukin 10-like protein). EHV-2 also encodes three potential G protein-coupled receptors, one with a counterpart in HVS that is specific for alpha chemokines, another with a counterpart in human cytomegalovirus (a beta-herpesvirus), which is specific for beta chemokines, and a third that is assigned more tentatively and lacks detectable counterparts in other herpesviruses.

摘要

测定了马疱疹病毒2型(EHV - 2)86/67株的完整DNA序列。该基因组大小为184,427碱基对,碱基组成为57.5%的G + C。对于疱疹病毒而言不同寻常的是,分布在几个大区域中的约三分之一序列似乎不编码蛋白质。已鉴定出的79个可能编码多肽的开放阅读框预计编码77种不同的蛋白质。氨基酸序列比较证实,EHV - 2是一种γ疱疹病毒,在基因上与猴疱疹病毒(HVS;一种γ2疱疹病毒)和爱泼斯坦 - 巴尔病毒(EBV;一种γ1疱疹病毒)呈线性关系,与前者关系更密切。此外,EHV - 2有8种蛋白质在HVS中有对应物,但在EBV中没有,只有一种蛋白质在EBV中有同源物,但在HVS中没有(EBV BCRF1,其编码一种白细胞介素10样蛋白)。EHV - 2还编码三种潜在的G蛋白偶联受体,一种在HVS中有对应物,对α趋化因子具有特异性,另一种在人巨细胞病毒(一种β疱疹病毒)中有对应物,对β趋化因子具有特异性,第三种的归属较为暂定,在其他疱疹病毒中缺乏可检测到的对应物。

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