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化学位移与蛋白质三维结构

Chemical shifts and three-dimensional protein structures.

作者信息

Oldfield E

机构信息

Department of Chemistry, University of Illinois at Urbana-Champaign 61801, USA.

出版信息

J Biomol NMR. 1995 Apr;5(3):217-25. doi: 10.1007/BF00211749.

DOI:10.1007/BF00211749
PMID:7787420
Abstract

During the past three years it has become possible to compute ab initio the 13C, 15N and 19F NMR chemical shifts of many sites in native proteins. Chemical shifts are beginning to become a useful supplement to more established methods of solution structure determination, and may find utility in solid-state analysis as well. From 13C NMR, information on phi, psi and chi torsions can be obtained, permitting both assignment verification, and structure refinement and prediction. For 15N, both torsional and hydrogen-bonding effects are important, while for 19F, chemical shifts are primarily indicators of the local charge field. Chemical shift calculations are still slow, but shielding hypersurfaces - the shift as a function of the dihedral angles that define the molecular conformation - are becoming accessible. Over the next few years, theoretical and computer hardware improvements will enable more routine use of chemical shifts in structural studies, including the study of metal-ligand interactions, the analysis of drug and substrate binding and catalysis, the study of folding/unfolding pathways, as well as the characterization of conformational substates. Rather than simply being a necessary prerequisite for multidimensional NMR, chemical shifts and chemical shift non-equivalence due to folding are now beginning to be useful for structural characterization.

摘要

在过去三年里,已经能够从头计算天然蛋白质中许多位点的13C、15N和19F核磁共振化学位移。化学位移开始成为更成熟的溶液结构测定方法的有用补充,并且在固态分析中也可能有用。从13C核磁共振中,可以获得有关φ、ψ和χ扭转的信息,从而既可以进行归属验证,也可以进行结构优化和预测。对于15N,扭转和氢键效应都很重要,而对于19F,化学位移主要是局部电荷场的指标。化学位移计算仍然很慢,但屏蔽超曲面——作为定义分子构象的二面角函数的位移——正变得可及。在未来几年,理论和计算机硬件的改进将使化学位移在结构研究中得到更常规的应用,包括金属-配体相互作用的研究、药物和底物结合与催化的分析、折叠/去折叠途径的研究,以及构象亚态的表征。化学位移以及由于折叠导致的化学位移不等价性,现在开始不仅是多维核磁共振的必要前提,而且对结构表征也很有用。

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2
Prospects for NMR of large proteins.大型蛋白质的核磁共振前景。
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3
NMR chemical shifts and structure refinement in proteins.蛋白质中的核磁共振化学位移与结构优化
通过 MAS NMR 和 QM/MM 确定半乳凝素-3 中精确的骨架 C 和 N 化学位移张量:结构和环境细节很重要。
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Eur Biophys J. 2018 Sep;47(6):679-691. doi: 10.1007/s00249-018-1304-4. Epub 2018 Apr 24.
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Determination of accurate backbone chemical shift tensors in microcrystalline proteins by integrating MAS NMR and QM/MM.通过整合 MAS NMR 和 QM/MM 技术,精确测定微晶体蛋白质的骨架化学位移张量。
Phys Chem Chem Phys. 2018 Apr 4;20(14):9543-9553. doi: 10.1039/c8cp00647d.
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Predicting the redox state and secondary structure of cysteine residues using multi-dimensional classification analysis of NMR chemical shifts.利用核磁共振化学位移的多维分类分析预测半胱氨酸残基的氧化还原状态和二级结构。
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Multi-probe relaxation dispersion measurements increase sensitivity to protein dynamics.多探针弛豫色散测量提高了对蛋白质动力学的灵敏度。
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