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本文引用的文献

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Definitive Benchmark Study of Ring Current Effects on Amide Proton Chemical Shifts.环电流对酰胺质子化学位移影响的确定性基准研究。
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Cofactor-Mediated Conformational Dynamics Promote Product Release From Escherichia coli Dihydrofolate Reductase via an Allosteric Pathway.辅因子介导的构象动力学通过变构途径促进大肠杆菌二氢叶酸还原酶的产物释放。
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Accurate scoring of non-uniform sampling schemes for quantitative NMR.定量核磁共振非均匀采样方案的准确评分
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relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data.弛豫:使用 NMR 弛豫分散数据分析生物分子动力学和热力学。
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Automated identification of functional dynamic contact networks from X-ray crystallography.基于 X 射线晶体学的功能动态接触网络的自动识别。
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Fast and accurate fitting of relaxation dispersion data using the flexible software package GLOVE.使用灵活的软件包 GLOVE 快速准确地拟合弛豫弥散数据。
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Interpreting protein structural dynamics from NMR chemical shifts.从 NMR 化学位移推断蛋白质结构动力学。
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Increasing the exchange time-scale that can be probed by CPMG relaxation dispersion NMR.提高 CPMG 弛豫分散 NMR 可探测的交换时间尺度。
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The feasibility of parameterizing four-state equilibria using relaxation dispersion measurements.使用弛豫分散测量对四态平衡进行参数化的可行性。
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多探针弛豫色散测量提高了对蛋白质动力学的灵敏度。

Multi-probe relaxation dispersion measurements increase sensitivity to protein dynamics.

作者信息

Fenwick R Bryn, Oyen David, Wright Peter E

机构信息

Department of Integrative Structural and Computational Biology and Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, USA.

出版信息

Phys Chem Chem Phys. 2016 Feb 17;18(8):5789-98. doi: 10.1039/c5cp04670j.

DOI:10.1039/c5cp04670j
PMID:26426424
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4758882/
Abstract

Carr-Purcell-Meiboom-Gill (CPMG) relaxation dispersion measurements are a valuable tool for the characterization of structural transitions on the micro-millisecond timescale. While the measurement of (15)N relaxation dispersion is now routine, the measurements with alternative nuclei remain limited. Here we report (15)N as well as (1)H R2 relaxation dispersion measurements of the N23PP/S148A "dynamic knockout" mutant of dihydrofolate reductase. The (1)H dispersion measurements are complementary to (15)N data as many additional residues are observed to have dispersive behavior for the (1)H nucleus. Simultaneous fitting of the dispersion profiles for the two nuclei increases the accuracy of exchange parameters determined for individual residues and clustered groups of residues. The different sensitivity of the two nuclei to changes in backbone torsional angles, ring currents, and hydrogen bonding effects provides important insights into the nature of the structural changes that take place during the exchange process. We observe clear evidence of direct and indirect hydrogen bond effects for the (15)N and (1)H chemical shift changes in the active-site, modulation of ring current shielding in the CD-loop and backbone torsional changes in a cluster of residues associated with the C-terminus. This work demonstrates the power of combined (1)H and (15)N probes for the study of backbone dynamics on the micro-millisecond timescale though the analysis of chemical shift changes.

摘要

卡尔-珀塞尔-迈博姆-吉尔(CPMG)弛豫色散测量是表征微秒时间尺度上结构转变的一种有价值的工具。虽然目前(15)N弛豫色散测量已成为常规操作,但使用其他原子核的测量仍然有限。在此,我们报告了二氢叶酸还原酶的N23PP/S148A“动态敲除”突变体的(15)N以及(1)H R2弛豫色散测量结果。由于观察到许多额外的残基对(1)H原子核具有色散行为,因此(1)H色散测量是对(15)N数据的补充。对两个原子核的色散曲线进行同时拟合,提高了为单个残基和残基聚类组确定的交换参数的准确性。两个原子核对主链扭转角、环电流和氢键效应变化的不同敏感性,为交换过程中发生的结构变化的本质提供了重要见解。我们观察到活性位点中(15)N和(1)H化学位移变化存在直接和间接氢键效应的明确证据,CD环中环电流屏蔽的调制以及与C端相关的一组残基中的主链扭转变化。这项工作通过对化学位移变化的分析,证明了(1)H和(15)N组合探针在研究微秒时间尺度上主链动力学方面的作用。