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染色质通过突变偏好进行自我组织。

Chromatin self-organization by mutation bias.

作者信息

Holmquist G P

机构信息

Department of Biology, Beckman Research Institute, City of Hope Medical Center, Duarte, CA 91010.

出版信息

J Mol Evol. 1994 Nov;39(5):436-8. doi: 10.1007/BF00173411.

DOI:10.1007/BF00173411
PMID:7807533
Abstract

Proteins, on binding to a DNA sequence, alter the frequency and quality of mutations that occur in the sequence. This represents a reverse flow of information from proteins to DNA. Nucleosome binding causes patterns of UV-induced damage which, when converted to mutations by replication, will phase nucleosomes. We propose that DNA binding proteins create their own high- or low-affinity binding sites along DNA sequences by biased mutational pressure.

摘要

蛋白质与DNA序列结合后,会改变该序列中发生突变的频率和性质。这代表了从蛋白质到DNA的反向信息流。核小体结合会导致紫外线诱导的损伤模式,这种损伤在复制过程中转化为突变时,会使核小体定相。我们提出,DNA结合蛋白通过有偏向性的突变压力沿着DNA序列创建自身的高亲和力或低亲和力结合位点。

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1
Chromatin self-organization by mutation bias.染色质通过突变偏好进行自我组织。
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2
UV-Induced DNA Damage and Mutagenesis in Chromatin.染色质中紫外线诱导的 DNA 损伤和突变。
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EMBO J. 1999 Dec 1;18(23):6585-98. doi: 10.1093/emboj/18.23.6585.
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Nucleotide excision repair and photolyase repair of UV photoproducts in nucleosomes: assessing the existence of nucleosome and non-nucleosome rDNA chromatin in vivo.核小体中紫外线光产物的核苷酸切除修复和光解酶修复:评估体内核小体和非核小体rDNA染色质的存在情况。
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Unusual DNA structures associated with germline genetic activity in Caenorhabditis elegans.与秀丽隐杆线虫种系遗传活性相关的异常DNA结构。
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Clusters of S1 nuclease-hypersensitive sites induced in vivo by DNA damage.由DNA损伤在体内诱导产生的S1核酸酶超敏位点簇。

本文引用的文献

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Organization of mutations along the genome: a prime determinant of genome evolution.基因突变的组织方式:基因组进化的主要决定因素。
Trends Ecol Evol. 1994 Feb;9(2):65-9. doi: 10.1016/0169-5347(94)90277-1.
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Relationship between G + C in silent sites of codons and amino acid composition of human proteins.密码子沉默位点的G + C与人类蛋白质氨基酸组成之间的关系。
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Region-specific rates of molecular evolution: a fourfold reduction in the rate of accumulation of "silent" mutations in transcribed versus nontranscribed regions of homologous DNA fragments derived from two closely related mouse species.
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Breakpoints in alpha, beta, and satellite III DNA sequences of chromosome 9 result in a variety of pericentric inversions.9号染色体的α、β和卫星III DNA序列中的断点会导致多种臂间倒位。
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分子进化的区域特异性速率:来自两个亲缘关系密切的小鼠物种的同源DNA片段的转录区与非转录区相比,“沉默”突变积累速率降低了四倍。
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Sequence periodicities in chicken nucleosome core DNA.鸡核小体核心DNA中的序列周期性
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Directional mutation pressure and neutral molecular evolution.定向突变压力与中性分子进化
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6
Photofootprint of nucleosome core DNA in intact chromatin having different structural states.完整染色质中具有不同结构状态的核小体核心DNA的光足迹。
J Mol Biol. 1988 Dec 20;204(4):949-58. doi: 10.1016/0022-2836(88)90054-x.
7
The bending of DNA in nucleosomes and its wider implications.核小体中DNA的弯曲及其更广泛的影响。
Philos Trans R Soc Lond B Biol Sci. 1987 Dec 15;317(1187):537-61. doi: 10.1098/rstb.1987.0080.
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The structure of DNA in a nucleosome.核小体中DNA的结构。
Proc Natl Acad Sci U S A. 1990 Oct;87(19):7405-9. doi: 10.1073/pnas.87.19.7405.
9
UV induced (6-4) photoproducts are distributed differently than cyclobutane dimers in nucleosomes.紫外线诱导产生的(6-4)光产物在核小体中的分布与环丁烷二聚体不同。
Photochem Photobiol. 1990 Apr;51(4):411-7. doi: 10.1111/j.1751-1097.1990.tb01732.x.
10
A population genetic model of selection that maintains specific trinucleotides at a specific location.
J Mol Evol. 1990 Jul;31(1):10-7. doi: 10.1007/BF02101787.