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一种用于鉴定枯草芽孢杆菌噬菌体phi 29的蛋白质p6中功能性氨基酸的遗传学方法。

A genetic approach to the identification of functional amino acids in protein p6 of Bacillus subtilis phage phi 29.

作者信息

Bravo A, Hermoso J M, Salas M

机构信息

Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Universidad Autónoma, Madrid, Spain.

出版信息

Mol Gen Genet. 1994 Dec 1;245(5):529-36. doi: 10.1007/BF00282215.

DOI:10.1007/BF00282215
PMID:7808404
Abstract

Protein p6 of the Bacillus subtilis phage phi 29 is essential for in vivo viral DNA replication. This protein activates the initiation of phi 29 DNA replication in vitro by forming a multimeric nucleoprotein complex at the replication origins. The N-terminal region of protein p6 is involved in DNA binding, as shown by in vitro studies with p6 proteins altered by deletions or missense mutations. We report on the development of an in vivo functional assay for protein p6. This assay is based on the ability of protein p6-producing B. subtilis non-suppressor (su) cells to support growth of a phi 29 sus6 mutant phage. We have used this trans-complementation assay to investigate the effect on in vivo viral DNA synthesis of missense mutations introduced into the protein p6 N-terminal region. The alteration of lysine to alanine at position 2 resulted in a partially functional protein, whereas the replacement of arginine by alanine at position 6 gave rise to an inactive protein. These results indicate that arginine at position 6 is critical for the in vivo activity of protein p6. Our complementation system provides a useful genetic approach for the identification of functionally important amino acids in protein p6.

摘要

枯草芽孢杆菌噬菌体phi 29的蛋白质p6对体内病毒DNA复制至关重要。该蛋白质通过在复制起点形成多聚体核蛋白复合物,在体外激活phi 29 DNA复制的起始。如对因缺失或错义突变而改变的p6蛋白进行的体外研究所显示,蛋白质p6的N端区域参与DNA结合。我们报告了一种针对蛋白质p6的体内功能检测方法的开发。该检测基于产生蛋白质p6的枯草芽孢杆菌非抑制(su)细胞支持phi 29 sus6突变体噬菌体生长的能力。我们已使用这种反式互补检测方法来研究引入蛋白质p6 N端区域的错义突变对体内病毒DNA合成的影响。第2位赖氨酸变为丙氨酸导致蛋白质部分功能化,而第6位精氨酸被丙氨酸取代则产生无活性的蛋白质。这些结果表明,第6位的精氨酸对蛋白质p6的体内活性至关重要。我们的互补系统为鉴定蛋白质p6中功能重要的氨基酸提供了一种有用的遗传学方法。

相似文献

1
A genetic approach to the identification of functional amino acids in protein p6 of Bacillus subtilis phage phi 29.一种用于鉴定枯草芽孢杆菌噬菌体phi 29的蛋白质p6中功能性氨基酸的遗传学方法。
Mol Gen Genet. 1994 Dec 1;245(5):529-36. doi: 10.1007/BF00282215.
2
In vivo functional relationships among terminal proteins of Bacillus subtilis phi 29-related phages.枯草芽孢杆菌phi 29相关噬菌体末端蛋白之间的体内功能关系。
Gene. 1994 Oct 11;148(1):107-12. doi: 10.1016/0378-1119(94)90242-9.
3
The in vivo function of phage phi29 nucleoid-associated protein p6 requires formation of dimers.噬菌体phi29类核相关蛋白p6的体内功能需要形成二聚体。
Gene. 2002 Aug 21;296(1-2):187-94. doi: 10.1016/s0378-1119(02)00857-0.
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DNA structure in the nucleoprotein complex that activates replication of phage phi 29.
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Phage phi 29 protein p6: a viral histone-like protein.噬菌体φ29蛋白p6:一种病毒组蛋白样蛋白。
Biochimie. 1994;76(10-11):981-91. doi: 10.1016/0300-9084(94)90023-x.
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Superhelical path of the DNA in the nucleoprotein complex that activates the initiation of phage phi 29 DNA replication.激活噬菌体phi 29 DNA复制起始的核蛋白复合物中DNA的超螺旋路径。
J Mol Biol. 1993 Mar 5;230(1):248-59. doi: 10.1006/jmbi.1993.1140.
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The phi29 transcriptional regulator contacts the nucleoid protein p6 to organize a repression complex.phi29转录调节因子与类核蛋白p6相互作用以组建一个阻遏复合物。
EMBO J. 2002 Nov 15;21(22):6185-94. doi: 10.1093/emboj/cdf623.
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Structural and functional studies on phi 29 DNA polymerase.
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The Bacillus subtilis phage phi 29 protein p16.7, involved in phi 29 DNA replication, is a membrane-localized single-stranded DNA-binding protein.参与枯草芽孢杆菌噬菌体phi 29 DNA复制的phi 29蛋白p16.7是一种定位于膜上的单链DNA结合蛋白。
J Biol Chem. 2002 Feb 22;277(8):6733-42. doi: 10.1074/jbc.M109312200. Epub 2001 Dec 10.

引用本文的文献

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Flexible structural arrangement and DNA-binding properties of protein p6 from Bacillus subtillis phage φ29.枯草芽孢杆菌φ29 噬菌体蛋白 p6 的灵活结构排列和 DNA 结合特性。
Nucleic Acids Res. 2024 Feb 28;52(4):2045-2065. doi: 10.1093/nar/gkae041.
2
DNA-Binding Proteins Essential for Protein-Primed Bacteriophage Φ29 DNA Replication.DNA 结合蛋白对于噬菌体 Φ29 蛋白引发的 DNA 复制是必需的。
Front Mol Biosci. 2016 Aug 5;3:37. doi: 10.3389/fmolb.2016.00037. eCollection 2016.
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Dissecting the role of the ϕ29 terminal protein DNA binding residues in viral DNA replication.

本文引用的文献

1
Superhelical path of the DNA in the nucleoprotein complex that activates the initiation of phage phi 29 DNA replication.激活噬菌体phi 29 DNA复制起始的核蛋白复合物中DNA的超螺旋路径。
J Mol Biol. 1993 Mar 5;230(1):248-59. doi: 10.1006/jmbi.1993.1140.
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Assembly of phage phi 29 genome with viral protein p6 into a compact complex.
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In vivo functional relationships among terminal proteins of Bacillus subtilis phi 29-related phages.枯草芽孢杆菌phi 29相关噬菌体末端蛋白之间的体内功能关系。
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Phage phi29 protein p56 prevents viral DNA replication impairment caused by uracil excision activity of uracil-DNA glycosylase.噬菌体φ29蛋白p56可防止由尿嘧啶-DNA糖基化酶的尿嘧啶切除活性导致的病毒DNA复制损伤。
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In vivo DNA binding of bacteriophage GA-1 protein p6.噬菌体GA-1蛋白p6的体内DNA结合
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7
The phage phi29 membrane protein p16.7, involved in DNA replication, is required for efficient ejection of the viral genome.参与DNA复制的噬菌体phi29膜蛋白p16.7是病毒基因组有效释放所必需的。
J Bacteriol. 2007 Aug;189(15):5542-9. doi: 10.1128/JB.00402-07. Epub 2007 May 25.
8
Binding of phage Phi29 architectural protein p6 to the viral genome: evidence for topological restriction of the phage linear DNA.噬菌体Phi29结构蛋白p6与病毒基因组的结合:噬菌体线性DNA拓扑限制的证据。
Nucleic Acids Res. 2004 Jul 1;32(11):3493-502. doi: 10.1093/nar/gkh668. Print 2004.
9
Genome wide, supercoiling-dependent in vivo binding of a viral protein involved in DNA replication and transcriptional control.全基因组范围内,一种参与DNA复制和转录调控的病毒蛋白的超螺旋依赖性体内结合。
Nucleic Acids Res. 2004 Apr 26;32(8):2306-14. doi: 10.1093/nar/gkh565. Print 2004.
10
Compartmentalization of phage phi29 DNA replication: interaction between the primer terminal protein and the membrane-associated protein p1.噬菌体phi29 DNA复制的区室化:引物末端蛋白与膜相关蛋白p1之间的相互作用。
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Gene. 1994 Oct 11;148(1):107-12. doi: 10.1016/0378-1119(94)90242-9.
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A new protein domain for binding to DNA through the minor groove.一种通过小沟与DNA结合的新蛋白质结构域。
EMBO J. 1994 Sep 15;13(18):4353-60. doi: 10.1002/j.1460-2075.1994.tb06755.x.
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Phage phi 29 protein p6: a viral histone-like protein.噬菌体φ29蛋白p6:一种病毒组蛋白样蛋白。
Biochimie. 1994;76(10-11):981-91. doi: 10.1016/0300-9084(94)90023-x.
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Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli.大肠杆菌核糖体RNA操纵子的基因组织与一级结构
J Mol Biol. 1981 May 15;148(2):107-27. doi: 10.1016/0022-2836(81)90508-8.
7
The protein covalently linked to the 5' termini of the DNA of Bacillus subtilis phage phi 29 is involved in the initiation of DNA replication.与枯草芽孢杆菌噬菌体phi 29的DNA 5'末端共价连接的蛋白质参与DNA复制的起始。
Virology. 1980 Jul 15;104(1):84-96. doi: 10.1016/0042-6822(80)90367-0.
8
High level synthesis in Escherichia coli of the Bacillus subtilis phage phi 29 proteins p3 and p4 under the control of phage lambda PL promoter.在噬菌体λ PL 启动子的控制下,枯草芽孢杆菌噬菌体 phi 29 蛋白 p3 和 p4 在大肠杆菌中的高水平合成。
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Nucleotide sequences of transcription and translation initiation regions in Bacillus phage phi 29 early genes.芽孢杆菌噬菌体φ29早期基因中转录和翻译起始区域的核苷酸序列。
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An improved method for separation of low-molecular-weight polypeptides by electrophoresis in sodium dodecyl sulfate-polyacrylamide gel.一种通过十二烷基硫酸钠-聚丙烯酰胺凝胶电泳分离低分子量多肽的改进方法。
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