Weaver L H, Grütter M G, Matthews B W
Institute of Molecular Biology, Howard Hughes Medical Institute, Eugene, OR.
J Mol Biol. 1995 Jan 6;245(1):54-68. doi: 10.1016/s0022-2836(95)80038-7.
The structure of goose egg-white lysozyme (GEWL) has been refined to an R-value of 15.9% at 1.6 A resolution. Details of the structure determination, the refinement and the structure itself are presented. The structure of a complex of the enzyme with the trisaccharide of N-acetyl glucosamine has also been determined and refined at 1.6 A resolution. The trisaccharide occupies sites analogous to the B, C and D subsites of chicken (HEWL) and phage T4 (T4L) lysozymes. All three lysozymes (GEWL, HEWL and T4L) display the same characteristic set of bridging hydrogen bonds between backbone atoms of the protein and the 2-acetamido group of the saccharide in subsite C. Glu73 of GEWL is seen to correspond closely to Glu35 of HEWL (and to Glu11 of T4L) and supports the established view that this group is critically involved in the catalytic mechanism. There is, however, no obvious residue in goose lysozyme that is a counterpart of Asp52 of chicken lysozyme (or of Asp20 in T4L), suggesting that a second acidic residue is not essential for the catalytic activity of goose lysozyme, and may not be required for the activity of other lysozymes.
鹅蛋清溶菌酶(GEWL)的结构已在1.6埃分辨率下精修至R值为15.9%。本文介绍了结构测定、精修及结构本身的详细情况。该酶与N - 乙酰葡糖胺三糖复合物的结构也已在1.6埃分辨率下测定并精修。三糖占据的位点类似于鸡(HEWL)和噬菌体T4(T4L)溶菌酶的B、C和D亚位点。所有三种溶菌酶(GEWL、HEWL和T4L)在亚位点C中蛋白质主链原子与糖类的2 - 乙酰氨基之间都显示出相同的一组特征性桥连氢键。GEWL的Glu73与HEWL的Glu35(以及T4L的Glu11)紧密对应,支持了该基团在催化机制中起关键作用的既定观点。然而,鹅溶菌酶中没有明显的残基与鸡溶菌酶的Asp52(或T4L中的Asp20)相对应,这表明第二个酸性残基对于鹅溶菌酶的催化活性并非必不可少,对于其他溶菌酶的活性可能也不是必需的。