Damude H G, Withers S G, Kilburn D G, Miller R C, Warren R A
Department of Chemistry,University of British Columbia, Vancouver, Canada.
Biochemistry. 1995 Feb 21;34(7):2220-4. doi: 10.1021/bi00007a016.
The catalytic domains of beta-1,4-glucanases can be grouped into families of related amino acid sequences. The endoglucanase CenA from Cellulomonas fimi is a member of family B. All enzymes from this family are believed to hydrolyze beta-1,4-glucosidic bonds using a general acid-base catalytic mechanism resulting in inversion of anomeric configuration at the scissile bond. Three-dimensional structures for two cellulases from family B have been determined by X-ray crystallographic analysis. These structures show that there are four Asp residues which are in a position to function as acid catalyst, base catalyst, and/or transition state stabilizers. These aspartates are conserved in all members of family B. The roles of Asp216, Asp252, Asp287, and Asp392, the corresponding amino acids in CenA, were determined. These aspartates have been systematically replaced with alanine and glutamate via site-directed mutagenesis, and the resulting effect on activity, substrate specificity, and overall structure has been determined. Changes in overall structure were monitored using circular dichroism spectroscopy, and no significant differences between the wild-type and mutant proteins were found. Active site structure was also found to be intact as all proteins bound to a cellobiose affinity column. The Michaelis-Menten parameters of the enzyme were determined on 2,4-dinitrophenyl cellobioside as well as (carboxymethyl)-cellulose and phosphoric acid-swollen cellulose. Initial characterization of mutant proteins indicates that Asp252 and Asp392 are the acid and base catalysts, respectively, in CenA. Residue Asp287 appears to aid Asp252 in acid catalysis, and Asp216 is not absolutely required for catalysis.
β-1,4-葡聚糖酶的催化结构域可分为相关氨基酸序列家族。来自纤维单胞菌的内切葡聚糖酶CenA是B家族的成员。据信该家族的所有酶都使用一般酸碱催化机制水解β-1,4-糖苷键,导致在可裂解键处异头构型反转。通过X射线晶体学分析确定了B家族两种纤维素酶的三维结构。这些结构表明有四个天冬氨酸残基,它们能够作为酸催化剂、碱催化剂和/或过渡态稳定剂发挥作用。这些天冬氨酸在B家族的所有成员中都是保守的。确定了CenA中相应氨基酸Asp216、Asp252、Asp287和Asp392的作用。通过定点诱变将这些天冬氨酸系统地替换为丙氨酸和谷氨酸,并确定了对活性、底物特异性和整体结构的影响。使用圆二色光谱监测整体结构的变化,未发现野生型和突变型蛋白质之间有显著差异。由于所有蛋白质都与纤维二糖亲和柱结合,因此还发现活性位点结构完整。在2,4-二硝基苯基纤维二糖苷以及(羧甲基)纤维素和磷酸膨胀纤维素上测定了该酶的米氏参数。突变蛋白的初步表征表明,Asp252和Asp392分别是CenA中的酸催化剂和碱催化剂。Asp287残基似乎在酸催化中协助Asp252,而Asp216不是催化绝对必需的。