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多重DNA变异关联分析:在I型糖尿病胰岛素基因区域的应用

Multiple DNA variant association analysis: application to the insulin gene region in type I diabetes.

作者信息

Julier C, Lucassen A, Villedieu P, Delepine M, Levy-Marchal C, Danzé P M, Bianchi F, Boitard C, Froguel P, Bell J

机构信息

INSERM U358, Hôpital Robert Debré, Paris.

出版信息

Am J Hum Genet. 1994 Dec;55(6):1247-54.

PMID:7977386
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1918440/
Abstract

Association and linkage studies have shown that at least one of the genetic factors involved in susceptibility to insulin-dependent diabetes mellitus (IDDM) is contained within a 4.1-kb region of the insulin gene. Sequence analysis has led to the identification of 10 DNA variants in this region that are associated with increased risk for IDDM. These variants are in strong linkage disequilibrium with each other, and previous studies have failed to distinguish between the variant(s) that cause increased susceptibility to IDDM and others that are associated with the disease because of linkage disequilibrium. To address this problem, we have undertaken a large population study of French diabetics and controls and have analyzed genotype patterns for several of the variant sites simultaneously. This has led to the identification of a subset consisting of four variants (-2733AC, -23HphI, -365VNTR, and +1140AC), at least one of which appears to be directly implicated in disease susceptibility. The multiple-DNA-variant association-analysis approach that is applied here to the problem of identifying potential susceptibility variants in IDDM is likely to be important in studies of many other multifactorial diseases.

摘要

关联研究和连锁研究表明,胰岛素依赖型糖尿病(IDDM)易感性所涉及的遗传因素中,至少有一个包含在胰岛素基因的一个4.1kb区域内。序列分析已在该区域鉴定出10个与IDDM风险增加相关的DNA变异体。这些变异体彼此处于强连锁不平衡状态,先前的研究未能区分导致IDDM易感性增加的变异体和由于连锁不平衡而与该疾病相关的其他变异体。为了解决这个问题,我们对法国糖尿病患者和对照人群进行了大规模研究,并同时分析了几个变异位点的基因型模式。这导致鉴定出一个由四个变异体(-2733AC、-23HphI、-365VNTR和+1140AC)组成的子集,其中至少有一个似乎直接与疾病易感性有关。本文应用于识别IDDM潜在易感性变异体问题的多DNA变异体关联分析方法,在许多其他多因素疾病的研究中可能很重要。

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1
Multiple DNA variant association analysis: application to the insulin gene region in type I diabetes.多重DNA变异关联分析:在I型糖尿病胰岛素基因区域的应用
Am J Hum Genet. 1994 Dec;55(6):1247-54.
2
Susceptibility to insulin dependent diabetes mellitus maps to a 4.1 kb segment of DNA spanning the insulin gene and associated VNTR.胰岛素依赖型糖尿病的易感性定位到一段跨越胰岛素基因及相关可变数目串联重复序列的4.1 kb DNA片段。
Nat Genet. 1993 Jul;4(3):305-10. doi: 10.1038/ng0793-305.
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Transmission test for linkage disequilibrium: the insulin gene region and insulin-dependent diabetes mellitus (IDDM).连锁不平衡的传递测试:胰岛素基因区域与胰岛素依赖型糖尿病(IDDM)
Am J Hum Genet. 1993 Mar;52(3):506-16.
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本文引用的文献

1
Susceptibility to insulin dependent diabetes mellitus maps to a 4.1 kb segment of DNA spanning the insulin gene and associated VNTR.胰岛素依赖型糖尿病的易感性定位到一段跨越胰岛素基因及相关可变数目串联重复序列的4.1 kb DNA片段。
Nat Genet. 1993 Jul;4(3):305-10. doi: 10.1038/ng0793-305.
2
HLA-DQ primarily confers protection and HLA-DR susceptibility in type I (insulin-dependent) diabetes studied in population-based affected families and controls.在基于人群的患病家庭和对照中所研究的I型(胰岛素依赖型)糖尿病中,HLA-DQ主要赋予保护作用,而HLA-DR则易导致发病。
Am J Hum Genet. 1993 Jul;53(1):150-67.
3
Localization of a type I diabetes susceptibility locus to the variable tandem repeat region flanking the insulin gene.将I型糖尿病易感基因座定位到胰岛素基因侧翼的可变串联重复序列区域。
Diabetes. 1993 Dec;42(12):1708-14. doi: 10.2337/diab.42.12.1708.
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Analysis of a 1963-bp polymorphic region flanking the human insulin gene.对人胰岛素基因侧翼一个1963bp多态性区域的分析。
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A polymorphic locus near the human insulin gene is associated with insulin-dependent diabetes mellitus.人类胰岛素基因附近的一个多态性位点与胰岛素依赖型糖尿病相关。
Diabetes. 1984 Feb;33(2):176-83. doi: 10.2337/diab.33.2.176.
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HLA DR antigens and susceptibility to insulin-dependent diabetes mellitus.人类白细胞抗原DR抗原与胰岛素依赖型糖尿病易感性
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7
Genetic heterogeneity, modes of inheritance, and risk estimates for a joint study of Caucasians with insulin-dependent diabetes mellitus.白种人胰岛素依赖型糖尿病联合研究的遗传异质性、遗传模式及风险评估
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Identification of the cystic fibrosis gene: genetic analysis.囊性纤维化基因的鉴定:遗传分析
Science. 1989 Sep 8;245(4922):1073-80. doi: 10.1126/science.2570460.
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Negative regulation of human insulin gene expression by the 5'-flanking region in non-pancreatic cells.5'侧翼区对非胰腺细胞中人胰岛素基因表达的负调控
FEBS Lett. 1989 Apr 10;247(1):41-5. doi: 10.1016/0014-5793(89)81236-0.
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Species and regional differences in the expression of cell-type specific elements at the human and rat tyrosine hydroxylase gene loci.人类和大鼠酪氨酸羟化酶基因位点上细胞类型特异性元件表达的物种和区域差异。
J Neurochem. 1990 Dec;55(6):2149-52. doi: 10.1111/j.1471-4159.1990.tb05811.x.