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虎甲Cicindela dorsalis中ITS-1区域的进化及系统发育信息含量

Evolution and phylogenetic information content of the ITS-1 region in the tiger beetle Cicindela dorsalis.

作者信息

Vogler A P, DeSalle R

机构信息

American Museum of Natural History, Department of Entomology, New York, New York 10024.

出版信息

Mol Biol Evol. 1994 May;11(3):393-405. doi: 10.1093/oxfordjournals.molbev.a040121.

Abstract

Sequence divergence in the internal transcribed spacer region 1 (ITS-1) of the ribosomal DNA locus was assessed in subspecies of the coastal North American tiger beetle, Cicindela dorsalis. The spacer region was amplified using the polymerase chain reaction and cloned for sequencing. Of a total of 50 clones obtained from 12 specimens, 42 clones were different in at least one nucleotide position. In a parsimony analysis of these sequences, the main phylogenetic distinction was found to separate sequences from the Gulf of Mexico and the Atlantic Ocean. Within these two assemblages phylogenetic resolution was low, and the variation within individuals was almost as high as the variation within the entire lineage. The pattern of sequence variation suggests the existence of two forms of the ITS-1 that are maintained on different chromosomes. Polymorphisms of limited geographical distribution could be detected, and 41 additional clones were partly sequenced, to assess the geographic distribution of these polymorphisms in more detail. In a population aggregation analysis, the geographic pattern of ITS-1 distribution was basically congruent with that obtained in earlier studies from mitochondrial DNA in the same C. dorsalis populations.

摘要

对北美沿海虎甲(Cicindela dorsalis)亚种核糖体DNA位点的内部转录间隔区1(ITS-1)的序列差异进行了评估。使用聚合酶链反应扩增间隔区并克隆用于测序。从12个标本中获得的总共50个克隆中,有42个克隆在至少一个核苷酸位置上不同。在对这些序列的简约分析中,发现主要的系统发育差异将来自墨西哥湾和大西洋的序列分开。在这两个组合中,系统发育分辨率较低,个体内的变异几乎与整个谱系内的变异一样高。序列变异模式表明存在两种形式的ITS-1,它们存在于不同的染色体上。可以检测到地理分布有限的多态性,并对另外41个克隆进行了部分测序,以更详细地评估这些多态性的地理分布。在群体聚集分析中,ITS-1分布的地理模式与早期对同一C. dorsalis种群线粒体DNA的研究结果基本一致。

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