具有形成茎环结构潜力的序列与动物线粒体DNA中的编码区重复相关。
Sequences with the potential to form stem-and-loop structures are associated with coding-region duplications in animal mitochondrial DNA.
作者信息
Stanton D J, Daehler L L, Moritz C C, Brown W M
机构信息
Department of Biology and Museum of Zoology, University of Michigan, Ann Arbor 48109-1048.
出版信息
Genetics. 1994 May;137(1):233-41. doi: 10.1093/genetics/137.1.233.
Abstract
Tandem duplications of gene-encoding regions occur in the mitochondrial DNA (mt DNA) of some individuals belonging to several species of whiptail lizards (genus Cnemidophorus). All or part of the duplicated regions of the mtDNAs from five different species were sequenced. In all, the duplication endpoints were within or immediately adjacent to sequences in tRNA, rRNA or protein genes that are capable of forming energetically stable stem-and-loop structures. In two of these mtDNAs, the duplication endpoints were also associated with a direct sequence repeat of 13 bp. The consistent association of stem-and-loop structures with duplication endpoints suggests that these structures may play a role in the duplication process. These data, combined with the absence of direct or palindromic repeats at three of the pairs of duplication endpoints, also suggest the existence of a mechanism for generating de novo duplications that is qualitatively different from those previously modeled.
摘要
编码基因区域的串联重复出现在几种鞭尾蜥蜴（鞭尾蜥属）的一些个体的线粒体DNA（mtDNA）中。对来自五个不同物种的mtDNA的全部或部分重复区域进行了测序。总体而言，重复端点位于能够形成能量稳定的茎环结构的tRNA、rRNA或蛋白质基因的序列内或紧邻其序列。在其中两个mtDNA中，重复端点还与一个13bp的直接序列重复相关。茎环结构与重复端点的一致关联表明这些结构可能在重复过程中发挥作用。这些数据，再加上在三对重复端点处不存在直接或回文重复，也表明存在一种与先前模型在性质上不同的从头重复生成机制。
相似文献
1
Sequences with the potential to form stem-and-loop structures are associated with coding-region duplications in animal mitochondrial DNA.具有形成茎环结构潜力的序列与动物线粒体DNA中的编码区重复相关。
Genetics. 1994 May;137(1):233-41. doi: 10.1093/genetics/137.1.233.
2
Parallel origins of duplications and the formation of pseudogenes in mitochondrial DNA from parthenogenetic lizards (Heteronotia binoei; Gekkonidae).孤雌生殖蜥蜴（双鼻半叶趾虎；壁虎科）线粒体DNA中重复序列的平行起源及假基因的形成
J Mol Evol. 1991 Nov;33(5):431-41. doi: 10.1007/BF02103135.
3
Tandem duplications in animal mitochondrial DNAs: variation in incidence and gene content among lizards.动物线粒体DNA中的串联重复：蜥蜴之间发生率和基因含量的差异
Proc Natl Acad Sci U S A. 1987 Oct;84(20):7183-7. doi: 10.1073/pnas.84.20.7183.
4
Tandem duplication of D-loop and ribosomal RNA sequences in lizard mitochondrial DNA.蜥蜴线粒体DNA中D环和核糖体RNA序列的串联重复
Science. 1986 Sep 26;233(4771):1425-7. doi: 10.1126/science.3018925.
5
Patterns of sequence variation in the mitochondrial D-loop region of shrews.鼩鼱线粒体D环区域的序列变异模式
Mol Biol Evol. 1994 Jan;11(1):9-21. doi: 10.1093/oxfordjournals.molbev.a040096.
6
Length variation in mitochondrial DNA of the minnow Cyprinella spiloptera.细尾真小鲤线粒体DNA的长度变异
Genetics. 1994 Sep;138(1):179-90. doi: 10.1093/genetics/138.1.179.
7
Novel repetitive structures, deviant protein-encoding sequences and unidentified ORFs in the mitochondrial genome of the brachiopod Lingula anatina.腕足动物鸭嘴海豆芽线粒体基因组中的新型重复结构、异常蛋白质编码序列和未鉴定的开放阅读框。
J Mol Evol. 2005 Jul;61(1):36-53. doi: 10.1007/s00239-004-0214-5. Epub 2005 Jun 14.
8
Multiple origins and rapid evolution of duplicated mitochondrial genes in parthenogenetic geckos (Heteronotia binoei; Squamata, Gekkonidae).孤雌生殖壁虎（双带半叶趾虎；有鳞目，壁虎科）中线粒体基因重复的多个起源与快速进化
Mol Biol Evol. 2007 Dec;24(12):2775-86. doi: 10.1093/molbev/msm212. Epub 2007 Oct 5.
9
Complete DNA sequence of the mitochondrial genome of the black chiton, Katharina tunicata.黑色石鳖（Katharina tunicata）线粒体基因组的完整DNA序列。
Genetics. 1994 Oct;138(2):423-43. doi: 10.1093/genetics/138.2.423.
10
Duplication of the tRNA(MMet) and tRNA(Cys) genes and of fragments of a gene encoding a subunit of the NADH dehydrogenase complex in Neurospora grassa mitochondrial DNA.粗糙脉孢菌线粒体DNA中tRNA（MMet）和tRNA（Cys）基因以及编码NADH脱氢酶复合体一个亚基的基因片段的重复。
Curr Genet. 1989 Jan;15(1):57-62. doi: 10.1007/BF00445752.
引用本文的文献
1
Insights into phylogenetic relationships and gene rearrangements: complete mitogenomes of two sympatric species in the genus (Anura, Ranidae).系统发育关系与基因重排的见解： 属（无尾目，蛙科）两个同域物种的完整线粒体基因组
Zookeys. 2024 Oct 21;1216:63-82. doi: 10.3897/zookeys.1216.131847. eCollection 2024.
2
Novel tRNA Gene Rearrangements in the Mitochondrial Genomes of Poneroid Ants and Phylogenetic Implication of Paraponerinae (Hymenoptera: Formicidae).猛蚁亚科蚂蚁线粒体基因组中的新型tRNA基因重排及副猛蚁亚科的系统发育意义（膜翅目：蚁科）
Life (Basel). 2023 Oct 16;13(10):2068. doi: 10.3390/life13102068.
3
The Complete Mitochondrial Genome of Box Tree Moth and Insights into Phylogenetics in Pyraloidea.黄杨绢野螟的完整线粒体基因组及对螟蛾总科系统发育的见解
Animals (Basel). 2023 Mar 14;13(6):1045. doi: 10.3390/ani13061045.
4
Complete mitochondrial genome of freshwater pearl mussel Lamellidens marginalis (Lamarck, 1819) and its phylogenetic relation within unionidae family.淡水珍珠贝（Lamarck, 1819）完整的线粒体基因组及其在珠蚌科内的系统发育关系。
Mol Biol Rep. 2022 Oct;49(10):9593-9603. doi: 10.1007/s11033-022-07857-5. Epub 2022 Aug 21.
5
Mitogenomics of Chinch Bugs from China and Implications for Its Coevolutionary Relationship with Grasses.中国稻绿蝽的线粒体基因组学及其与禾本科植物协同进化关系的研究
Insects. 2022 Jul 17;13(7):643. doi: 10.3390/insects13070643.
6
Complete mitochondrial genome of Episymploce splendens (Blattodea: Ectobiidae): A large intergenic spacer and lacking of two tRNA genes.壮丽潜叶甲（直翅目：叶甲科）的完整线粒体基因组：一个大的基因间隔区和缺少两个 tRNA 基因。
PLoS One. 2022 Jun 2;17(6):e0268064. doi: 10.1371/journal.pone.0268064. eCollection 2022.
7
Characterisation of the Complete Mitochondrial Genome of Critically Endangered (Carnivora: Mustelidae) and Its Phylogenetic and Conservation Implications.极度濒危物种（食肉目：鼬科）的完整线粒体基因组特征及其系统发育和保护意义。
Genes (Basel). 2022 Jan 10;13(1):125. doi: 10.3390/genes13010125.
8
The complete mitogenome of sp. (Neogastropoda, Conoidea, Raphitomidae) provides insights into the deep-sea adaptive evolution of Conoidea.某物种（新腹足目，芋螺总科，笔螺科）的完整线粒体基因组为芋螺总科的深海适应性进化提供了见解。
Ecol Evol. 2021 May 2;11(12):7518-7531. doi: 10.1002/ece3.7582. eCollection 2021 Jun.
9
Molluscan mitochondrial genomes break the rules.软体动物的线粒体基因组打破了规则。
Philos Trans R Soc Lond B Biol Sci. 2021 May 24;376(1825):20200159. doi: 10.1098/rstb.2020.0159. Epub 2021 Apr 5.
10
The complete mitochondrial genomes of two vent squat lobsters, and : Novel gene arrangements and phylogenetic implications.两种深海龙虾的完整线粒体基因组：新颖的基因排列及其系统发育意义
Ecol Evol. 2019 Sep 30;9(22):12390-12407. doi: 10.1002/ece3.5542. eCollection 2019 Nov.
本文引用的文献
1
Sequence and gene organization of mouse mitochondrial DNA.小鼠线粒体DNA的序列与基因组织
Cell. 1981 Oct;26(2 Pt 2):167-80. doi: 10.1016/0092-8674(81)90300-7.
2
tRNA punctuation model of RNA processing in human mitochondria.人类线粒体中RNA加工的tRNA标点模型
Nature. 1981 Apr 9;290(5806):470-4. doi: 10.1038/290470a0.
3
Complete sequence of bovine mitochondrial DNA. Conserved features of the mammalian mitochondrial genome.牛线粒体DNA的完整序列。哺乳动物线粒体基因组的保守特征。
J Mol Biol. 1982 Apr 25;156(4):683-717. doi: 10.1016/0022-2836(82)90137-1.
4
Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes.来自大肠杆菌、玉米叶绿体以及人类和小鼠线粒体核糖体的大亚基核糖体RNA的二级结构。
Nucleic Acids Res. 1981 Jul 24;9(14):3287-306. doi: 10.1093/nar/9.14.3287.
5
Mechanisms of evolution in animal mitochondrial DNA.动物线粒体DNA的进化机制。
Ann N Y Acad Sci. 1981;361:119-34. doi: 10.1111/j.1749-6632.1981.tb46515.x.
6
Structural intermediates of deletion mutagenesis: a role for palindromic DNA.缺失诱变的结构中间体：回文DNA的作用
Proc Natl Acad Sci U S A. 1984 Jan;81(2):512-6. doi: 10.1073/pnas.81.2.512.
7
Studies on transformation of Escherichia coli with plasmids.大肠杆菌质粒转化的研究。
J Mol Biol. 1983 Jun 5;166(4):557-80. doi: 10.1016/s0022-2836(83)80284-8.
8
Unique self-complementarity of palindromic sequences provides DNA structural intermediates for mutation.回文序列独特的自我互补性为突变提供了DNA结构中间体。
Cold Spring Harb Symp Quant Biol. 1983;47 Pt 2:851-61. doi: 10.1101/sqb.1983.047.01.097.
9
A rapid microscale technique for isolation of recombinant plasmid DNA suitable for restriction enzyme analysis.一种用于分离适合限制性内切酶分析的重组质粒DNA的快速微量技术。
Plasmid. 1980 Jan;3(1):88-91. doi: 10.1016/s0147-619x(80)90037-2.
10
The transcription map of human mitochondrial DNA implicates transfer RNA excision as a major processing event.人类线粒体DNA的转录图谱表明，转运RNA切除是一个主要的加工事件。
J Biol Chem. 1980 Dec 10;255(23):11599-606.
Zotero 插件