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基于乳清苷5'-单磷酸脱羧酶的真菌系统发育学。

A fungal phylogeny based upon orotidine 5'-monophosphate decarboxylase.

作者信息

Radford A

机构信息

Department of Genetics, University of Leeds, UK.

出版信息

J Mol Evol. 1993 Apr;36(4):389-95. doi: 10.1007/BF00182186.

DOI:10.1007/BF00182186
PMID:8315659
Abstract

Orotidine 5'-monophosphate decarboxylase protein sequences from 14 fungi, 1 slime mold, 2 mammals, and 3 bacteria are compared and aligned and shown to be homologous. Based on the optimal alignment of the fungal sequences, a phylogenetic tree is derived. Within the fungi, the fission yeast Schizosaccharomyces pombe shows a closer relationship to both basidiomycetes and phycomycetes than it does to orthodox ascomycetes (plectomycetes, pyrenomycetes, and budding yeasts). Intron conservation shows a close relationship between phycomycetes and basidiomycetes. The imperfect fungi Trichoderma and Cephalosporium are shown to be closely related to Neurospora. The predicted origin of the group of budding yeasts is dependent on the analytical method used.

摘要

对来自14种真菌、1种黏菌、2种哺乳动物和3种细菌的乳清苷5'-单磷酸脱羧酶蛋白质序列进行了比较和比对,结果显示它们具有同源性。基于真菌序列的最佳比对,构建了系统发育树。在真菌内部,裂殖酵母粟酒裂殖酵母与担子菌和藻状菌的关系比与正统子囊菌(盘菌、核菌和出芽酵母)的关系更为密切。内含子保守性表明藻状菌和担子菌之间存在密切关系。不完全真菌木霉属和头孢霉属被证明与脉孢菌密切相关。出芽酵母群的预测起源取决于所使用的分析方法。

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引用本文的文献

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Developments in fungal taxonomy.真菌分类学的发展
Clin Microbiol Rev. 1999 Jul;12(3):454-500. doi: 10.1128/CMR.12.3.454.
2
Concordance of gene genealogies reveals reproductive isolation in the pathogenic fungus Coccidioides immitis.基因谱系的一致性揭示了致病性真菌粗球孢子菌中的生殖隔离。
Proc Natl Acad Sci U S A. 1997 May 13;94(10):5478-82. doi: 10.1073/pnas.94.10.5478.
3
Phylogenesis of fission yeasts. Contradictions surrounding the origin of a century old genus.裂殖酵母的系统发育。围绕一个百年老属起源的矛盾。

本文引用的文献

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CLUSTAL: a package for performing multiple sequence alignment on a microcomputer.CLUSTAL:一个用于在微型计算机上进行多序列比对的程序包。
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Mol Gen Genet. 1988 Dec;215(1):81-6. doi: 10.1007/BF00331307.
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Nucleotide sequence of the Penicillium chrysogenum pyrG (orotidine-5'-phosphate decarboxylase) gene.产黄青霉pyrG(乳清苷-5'-磷酸脱羧酶)基因的核苷酸序列。
Nucleic Acids Res. 1988 Aug 25;16(16):8177. doi: 10.1093/nar/16.16.8177.
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Phylogenies from molecular sequences: inference and reliability.基于分子序列的系统发育:推断与可靠性
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Sequence analysis of the pyr-4 (orotidine 5'-P decarboxylase) gene of Neurospora crassa.粗糙脉孢菌的pyr-4(乳清苷5'-磷酸脱羧酶)基因的序列分析。
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