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大肠杆菌类核蛋白H-NS直接作为转录阻遏物发挥作用。

The Escherichia coli nucleoid protein H-NS functions directly as a transcriptional repressor.

作者信息

Ueguchi C, Mizuno T

机构信息

Laboratory of Microbiology, School of Agriculture, Nagoya University, Japan.

出版信息

EMBO J. 1993 Mar;12(3):1039-46. doi: 10.1002/j.1460-2075.1993.tb05745.x.

DOI:10.1002/j.1460-2075.1993.tb05745.x
PMID:8458322
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC413305/
Abstract

The H-NS protein is a major constituent of the Escherichia coli nucleoid structure and is implicated in the compact organization of the chromosome. Based on recent genetic evidence, this protein appears to influence the transcription of a variety of apparently unlinked genes on the chromosome, although the underlying molecular mechanism is not fully understood. In this study, we carried out a series of in vitro transcription assays including purified H-NS with special reference to the osmotically inducible proV promoter of the proVWX operon (or proU), whose expression is known to be derepressed by lesions of the hns (osmZ) gene. Here, H-NS was revealed to selectively inhibit an early step(s) of proV transcription initiation through its direct binding to the promoter region. It was thus demonstrated that H-NS functions directly as a transcriptional repressor. Under the in vitro conditions used, this in vitro inhibitory effect of H-NS was affected by changes in the superhelical density of template DNAs and more significantly by the concentration of potassium (K+) ions. These results are also discussed with regard to the mechanism underlying regulation of the proV promoter in response to the medium osmolarity.

摘要

H-NS蛋白是大肠杆菌类核结构的主要成分,与染色体的紧密组织有关。基于最近的遗传学证据,尽管其潜在的分子机制尚未完全了解,但该蛋白似乎会影响染色体上各种明显不相关基因的转录。在本研究中,我们进行了一系列体外转录试验,包括使用纯化的H-NS,特别参考了proVWX操纵子(或proU)的渗透压诱导型proV启动子,已知其表达会因hns(osmZ)基因的损伤而解除抑制。在此,发现H-NS通过直接结合启动子区域选择性抑制proV转录起始的早期步骤。因此证明H-NS直接作为转录阻遏物发挥作用。在所使用的体外条件下,H-NS的这种体外抑制作用受模板DNA超螺旋密度变化的影响,更受钾(K+)离子浓度的显著影响。还就proV启动子响应培养基渗透压的调控机制对这些结果进行了讨论。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9494/413305/434fc95252a9/emboj00075-0237-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9494/413305/483db5c16505/emboj00075-0234-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9494/413305/6e8404f62b8b/emboj00075-0235-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9494/413305/4d4640465730/emboj00075-0235-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9494/413305/7f07e9fe894f/emboj00075-0236-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9494/413305/25a6aae5cd9e/emboj00075-0236-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9494/413305/434fc95252a9/emboj00075-0237-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9494/413305/483db5c16505/emboj00075-0234-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9494/413305/6e8404f62b8b/emboj00075-0235-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9494/413305/4d4640465730/emboj00075-0235-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9494/413305/7f07e9fe894f/emboj00075-0236-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9494/413305/25a6aae5cd9e/emboj00075-0236-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9494/413305/434fc95252a9/emboj00075-0237-a.jpg

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本文引用的文献

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A third L-proline permease in Salmonella typhimurium which functions in media of elevated osmotic strength.鼠伤寒沙门氏菌中的第三种L-脯氨酸通透酶,其在高渗透压强度的培养基中发挥作用。
J Bacteriol. 1982 Sep;151(3):1433-43. doi: 10.1128/jb.151.3.1433-1443.1982.
2
Osmotic control of kdp operon expression in Escherichia coli.大肠杆菌中kdp操纵子表达的渗透调控
Proc Natl Acad Sci U S A. 1981 Jan;78(1):464-8. doi: 10.1073/pnas.78.1.464.
3
H1a, an E. coli DNA-binding protein which accumulates in stationary phase, strongly compacts DNA in vitro.
转录驱动的 DNA 超螺旋抵消了细菌染色质中 H-NS 介导的基因沉默。
Nat Commun. 2024 Mar 30;15(1):2787. doi: 10.1038/s41467-024-47114-w.
4
Rok from B. subtilis: Bridging genome structure and transcription regulation.来自枯草芽孢杆菌的Rok:连接基因组结构与转录调控
Mol Microbiol. 2025 Feb;123(2):109-123. doi: 10.1111/mmi.15250. Epub 2024 Mar 21.
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The environmentally-regulated interplay between local three-dimensional chromatin organisation and transcription of proVWX in E. coli.大肠杆菌中受环境调控的局部三维染色质组织与 proVWX 转录之间的相互作用。
Nat Commun. 2023 Nov 17;14(1):7478. doi: 10.1038/s41467-023-43322-y.
6
The B. subtilis Rok protein is an atypical H-NS-like protein irresponsive to physico-chemical cues.枯草芽孢杆菌 Rok 蛋白是一种对理化信号无响应的非典型 H-NS 样蛋白。
Nucleic Acids Res. 2022 Nov 28;50(21):12166-12185. doi: 10.1093/nar/gkac1064.
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Pervasive transcription enhances the accessibility of H-NS-silenced promoters and generates bistability in virulence gene expression.普遍转录增强了 H-NS 沉默启动子的可及性,并在毒力基因表达中产生了二稳态。
Proc Natl Acad Sci U S A. 2022 Jul 26;119(30):e2203011119. doi: 10.1073/pnas.2203011119. Epub 2022 Jul 18.
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RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in K-12.RegulonDB 11.0:K-12 中转录调控的综合高通量数据集。
Microb Genom. 2022 May;8(5). doi: 10.1099/mgen.0.000833.
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Distinct heterochromatin-like domains promote transcriptional memory and silence parasitic genetic elements in bacteria.独特的异染色质样结构域促进了细菌中转录记忆和寄生遗传元件的沉默。
EMBO J. 2022 Feb 1;41(3):e108708. doi: 10.15252/embj.2021108708. Epub 2021 Dec 28.
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Nucleoid-associated proteins shape chromatin structure and transcriptional regulation across the bacterial kingdom.类核相关蛋白塑造了整个细菌界的染色质结构和转录调控。
Transcription. 2021 Aug;12(4):182-218. doi: 10.1080/21541264.2021.1973865. Epub 2021 Sep 9.
H1a是一种在稳定期积累的大肠杆菌DNA结合蛋白,它在体外能使DNA强烈压缩。
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4
The facile generation of covalently closed, circular DNAs with defined negative superhelical densities.以确定的负超螺旋密度轻松生成共价闭合的环状DNA。
Anal Biochem. 1982 May 15;122(2):253-7. doi: 10.1016/0003-2697(82)90277-9.
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Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA.一种质粒特异性小RNA对ColE1 RNA引物形成的抑制作用。
Proc Natl Acad Sci U S A. 1981 Mar;78(3):1421-5. doi: 10.1073/pnas.78.3.1421.
6
Osmotic regulation of L-proline transport in Salmonella typhimurium.鼠伤寒沙门氏菌中L-脯氨酸转运的渗透调节
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Osmoregulation of gene expression in Salmonella typhimurium: proU encodes an osmotically induced betaine transport system.鼠伤寒沙门氏菌中基因表达的渗透调节:proU编码一种渗透诱导的甜菜碱转运系统。
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Sequence distributions associated with DNA curvature are found upstream of strong E. coli promoters.与DNA弯曲相关的序列分布在大肠杆菌强启动子的上游被发现。
Nucleic Acids Res. 1987 Jan 26;15(2):785-96. doi: 10.1093/nar/15.2.785.
9
Osmotic regulation of transcription: induction of the proU betaine transport gene is dependent on accumulation of intracellular potassium.转录的渗透调节:脯氨酸/甜菜碱转运基因proU的诱导依赖于细胞内钾离子的积累。
J Bacteriol. 1986 Nov;168(2):805-14. doi: 10.1128/jb.168.2.805-814.1986.
10
Production of single-stranded plasmid DNA.单链质粒DNA的制备。
Methods Enzymol. 1987;153:3-11. doi: 10.1016/0076-6879(87)53044-0.