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酶实验进化过程中过渡态结构的巨大变化。

Large changes of transition-state structure during experimental evolution of an enzyme.

作者信息

Srinivasan K, Konstantinidis A, Sinnott M L, Hall B G

机构信息

Department of Chemistry, University of Illinois, Chicago 60607-7061.

出版信息

Biochem J. 1993 Apr 1;291 ( Pt 1)(Pt 1):15-7. doi: 10.1042/bj2910015.

Abstract

The question of whether, during the evolution of an enzyme, the transition state of the catalysed reaction is largely unchanged, or whether transition state and protein change together, was examined using the egb beta-galactosidases of Escherichia coli. Charge development at the first chemical state was assumed [Konstantinidis and Sinnott (1991) Biochem. J. 279, 587-593] to be proportional to delta delta G++, the ratio of second-order rate constants for the hydrolysis of beta-D-galactopyranosyl fluoride and 1-fluoro-D-galactopyranosyl fluoride, expressed as a free-energy difference. delta delta G++ (kJ.mol-1) falls from 10.4 for wild-type enzyme to 6.8 and 7.2 as a consequence of two different single amino-acid changes (which arise from single evolutionary events), to 6.3 as a consequence of the two amino-acid changes together, and then increases slightly to 7.3 as a consequence of a third single evolutionary change involving three further amino-acid changes.

摘要

在酶的进化过程中,催化反应的过渡态是基本不变,还是过渡态与蛋白质一起变化,这个问题通过研究大肠杆菌的egbβ-半乳糖苷酶得以探讨。根据[康斯坦丁尼迪斯和辛诺特(1991年),《生物化学杂志》279卷,587 - 593页]的研究,假定在第一个化学状态下电荷的变化与δδG++成正比,δδG++是β-D-吡喃半乳糖基氟化物和1-氟-D-吡喃半乳糖基氟化物水解的二级速率常数之比,以自由能差表示。δδG++(kJ·mol-1)从野生型酶的10.4下降到因两个不同的单氨基酸变化(由单个进化事件引起)导致的6.8和7.2,因这两个氨基酸变化共同作用下降到6.3,然后由于涉及另外三个氨基酸变化的第三个单进化变化而略微增加到7.3。

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Glycosyl fluorides and azides.糖基氟化物和叠氮化物。
Adv Carbohydr Chem. 1961;16:85-103. doi: 10.1016/s0096-5332(08)60260-x.
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