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1
Quantitative determination of the steady-state kinetics of multienzyme reactions using the algebraic rate equations for the component single-enzyme reactions.使用组分单酶反应的代数速率方程对多酶反应的稳态动力学进行定量测定。
Biochem J. 1993 Apr 15;291 ( Pt 2)(Pt 2):585-93. doi: 10.1042/bj2910585.
2
[Kinetics of reactions in multienzyme systems. I. Steady state processes in bienzyme systems. Lineal multienzyme sequences].[多酶系统中的反应动力学。I. 双酶系统中的稳态过程。线性多酶序列]
Mol Biol (Mosk). 1977 May-Jun;11(3):564-81.
3
Calculation of steady-state rate equations and the fluxes between substrates and products in enzyme reactions.酶促反应中稳态速率方程以及底物与产物之间通量的计算。
Biochem J. 1977 Mar 1;161(3):517-26. doi: 10.1042/bj1610517.
4
Modeling networks of coupled enzymatic reactions using the total quasi-steady state approximation.使用全准稳态近似法对耦合酶促反应网络进行建模。
PLoS Comput Biol. 2007 Mar 16;3(3):e45. doi: 10.1371/journal.pcbi.0030045.
5
The analysis of metabolite channelling in multienzyme complexes and multifunctional proteins.多酶复合物和多功能蛋白质中代谢物通道化的分析。
Biochem J. 1989 Dec 1;264(2):605-7. doi: 10.1042/bj2640605.
6
Stability of multienzyme systems with feedback regulation: a graph theoretical approach.具有反馈调节的多酶系统的稳定性:一种图论方法。
J Theor Biol. 1985 Feb 7;112(3):493-503. doi: 10.1016/s0022-5193(85)80017-5.
7
Steady-state kinetic formalism applied to multienzyme complexes, oxidative phosphorylation, and interacting enzymes.应用于多酶复合物、氧化磷酸化和相互作用酶的稳态动力学形式体系。
Proc Natl Acad Sci U S A. 1976 Dec;73(12):4432-6. doi: 10.1073/pnas.73.12.4432.
8
Rapid simulation and analysis of isotopomer distributions using constraints based on enzyme mechanisms: an example from HT29 cancer cells.基于酶机制约束的同位素异构体分布的快速模拟与分析:来自HT29癌细胞的一个例子。
Bioinformatics. 2005 Sep 1;21(17):3558-64. doi: 10.1093/bioinformatics/bti573. Epub 2005 Jul 7.
9
[Kinetic model and mechanism of regulation of a multienzyme system of thromboxane synthesis].[血栓烷合成多酶系统的动力学模型及调控机制]
Mol Biol (Mosk). 1985 Nov-Dec;19(6):1648-60.
10
Mathematical modeling of living cell metabolism using the method of steady-state stoichiometric flux balance.使用稳态化学计量通量平衡方法对活细胞代谢进行数学建模。
J Bioinform Comput Biol. 2006 Aug;4(4):865-85. doi: 10.1142/s0219720006002247.

本文引用的文献

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The kinetics of enzyme-catalyzed reactions with two or more substrates or products. I. Nomenclature and rate equations.具有两种或更多种底物或产物的酶催化反应动力学。I. 命名法和速率方程。
Biochim Biophys Acta. 1963 Jan 8;67:104-37. doi: 10.1016/0006-3002(63)91800-6.
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Analysis of sequential reactions.连续反应分析
Ann N Y Acad Sci. 1963 May 10;108:305-21. doi: 10.1111/j.1749-6632.1963.tb13382.x.
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The control of enzyme systems in vivo: elasticity analysis of the steady state.体内酶系统的控制:稳态的弹性分析
Biochem Soc Trans. 1983 Jan;11(1):35-40. doi: 10.1042/bst0110035.
4
A linear steady-state treatment of enzymatic chains. General properties, control and effector strength.酶促链的线性稳态处理。一般性质、控制与效应强度。
Eur J Biochem. 1974 Feb 15;42(1):89-95. doi: 10.1111/j.1432-1033.1974.tb03318.x.
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The control of flux.通量的控制
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Metabolic control and its analysis. Additional relationships between elasticities and control coefficients.代谢控制及其分析。弹性与控制系数之间的其他关系。
Eur J Biochem. 1985 May 2;148(3):555-61. doi: 10.1111/j.1432-1033.1985.tb08876.x.
7
Metabolic control analysis of moiety-conserved cycles.部分守恒循环的代谢控制分析
Eur J Biochem. 1986 Mar 17;155(3):631-41. doi: 10.1111/j.1432-1033.1986.tb09534.x.
8
METAMOD: software for steady-state modelling and control analysis of metabolic pathways on the BBC microcomputer.METAMOD:用于BBC微型计算机上代谢途径稳态建模与控制分析的软件。
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9
Ultimate limits for the reaction flux and metabolite levels that may be evolutionarily reached in a linear metabolic pathway.线性代谢途径中可能在进化上达到的反应通量和代谢物水平的最终极限。
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10
MetaModel: a program for modelling and control analysis of metabolic pathways on the IBM PC and compatibles.元模型:一款用于在IBM个人电脑及其兼容机上对代谢途径进行建模与控制分析的程序。
Comput Appl Biosci. 1991 Jan;7(1):89-93. doi: 10.1093/bioinformatics/7.1.89.

使用组分单酶反应的代数速率方程对多酶反应的稳态动力学进行定量测定。

Quantitative determination of the steady-state kinetics of multienzyme reactions using the algebraic rate equations for the component single-enzyme reactions.

作者信息

Stoner C D

机构信息

Department of Surgery, Ohio State University, Columbus 43210.

出版信息

Biochem J. 1993 Apr 15;291 ( Pt 2)(Pt 2):585-93. doi: 10.1042/bj2910585.

DOI:10.1042/bj2910585
PMID:8484738
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1132564/
Abstract

Methods are given whereby the steady-state kinetic characteristics of multienzyme reactions consisting of individual single-enzyme reactions linked by freely diffusible intermediates can be determined quantitatively from the experimentally determined complete algebraic rate equations for the individual reactions. The approach is based on the fact that a valid steady-state rate equation for such a multienzyme reaction, in terms of the rate equations for the individual reactions, can be obtained simply from knowledge of the relative rates of the individual reactions when the multienzyme reaction is in the steady state. A number of model multienzyme reactions, which differ as to structural arrangement of the individual reactions, are examined by this approach. Simple mathematical methods which are applicable to most of these models are given for direct calculation of dependent variables. It is either pointed out or demonstrated with Mathematica that the rate equations for all of these models can be handled very easily with the aid of a personal computer equipped with appropriate equation-solving software. Since the approach permits evaluation of all dependent variables for any specific combination of values for the kinetic parameters and independent variables, numerical values for the flux control coefficients of the individual enzymes can be obtained by direct calculation for a wide variety of conditions and can be compared with those obtained according to the methods of Metabolic Control Analysis. Several such comparisons have been made and in all cases identical results were obtained. The intuitive notion that the individual enzymes of a multienzyme reaction would be equally rate limiting if the total amount of enzyme were being used with maximum efficiency is tested and shown to be incorrect. In the course of this test the flux control coefficient for the individual enzymes were found to be appropriate indicators of relative rate limitation or control by the enzymes and to account properly for differences in specific activity among the enzymes.

摘要

文中给出了一些方法,通过这些方法,可以根据实验测定的各个单酶反应的完整代数速率方程,定量地确定由可自由扩散的中间体连接的单酶反应组成的多酶反应的稳态动力学特征。该方法基于这样一个事实:对于这样一个多酶反应,就各个反应的速率方程而言,一个有效的稳态速率方程可以简单地从多酶反应处于稳态时各个反应的相对速率的知识中获得。通过这种方法研究了一些模型多酶反应,这些反应在各个反应的结构排列上有所不同。给出了适用于这些模型中大多数的简单数学方法,用于直接计算因变量。文中指出或用Mathematica证明,借助配备适当方程求解软件的个人计算机,可以非常容易地处理所有这些模型的速率方程。由于该方法允许评估动力学参数和自变量的任何特定值组合的所有因变量,因此可以通过直接计算在各种条件下获得各个酶的通量控制系数的数值,并将其与根据代谢控制分析方法获得的数值进行比较。已经进行了几次这样的比较,在所有情况下都得到了相同的结果。对多酶反应中各个酶如果以最大效率使用酶总量时将同样成为速率限制因素这一直观概念进行了检验,并证明是不正确的。在这个检验过程中,发现各个酶的通量控制系数是酶相对速率限制或控制的合适指标,并且能够恰当地解释酶之间比活性的差异。