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1
Proton transport by a bacteriorhodopsin mutant, aspartic acid-85-->asparagine, initiated in the unprotonated Schiff base state.细菌视紫红质突变体(天冬氨酸-85→天冬酰胺)的质子转运始于未质子化的席夫碱状态。
Proc Natl Acad Sci U S A. 1995 Dec 5;92(25):11519-23. doi: 10.1073/pnas.92.25.11519.
2
Local-access model for proton transfer in bacteriorhodopsin.细菌视紫红质中质子转移的局部通道模型
Biochemistry. 1998 Mar 17;37(11):3982-93. doi: 10.1021/bi9728396.
3
Substitution of amino acids Asp-85, Asp-212, and Arg-82 in bacteriorhodopsin affects the proton release phase of the pump and the pK of the Schiff base.细菌视紫红质中氨基酸天冬氨酸-85、天冬氨酸-212和精氨酸-82的取代会影响泵的质子释放阶段以及席夫碱的pK值。
Proc Natl Acad Sci U S A. 1990 Feb;87(3):1018-22. doi: 10.1073/pnas.87.3.1018.
4
Aspartic acid-96 is the internal proton donor in the reprotonation of the Schiff base of bacteriorhodopsin.天冬氨酸-96是细菌视紫红质席夫碱再质子化过程中的内部质子供体。
Proc Natl Acad Sci U S A. 1989 Dec;86(23):9228-32. doi: 10.1073/pnas.86.23.9228.
5
Replacement of aspartic acid-96 by asparagine in bacteriorhodopsin slows both the decay of the M intermediate and the associated proton movement.细菌视紫红质中天冬氨酸-96被天冬酰胺取代会减缓M中间体的衰减以及相关的质子移动。
Proc Natl Acad Sci U S A. 1989 Apr;86(7):2167-71. doi: 10.1073/pnas.86.7.2167.
6
Two groups control light-induced Schiff base deprotonation and the proton affinity of Asp85 in the Arg82 his mutant of bacteriorhodopsin.两组控制光诱导席夫碱去质子化和 Arg82His 突变菌紫质中 Asp85 的质子亲和力。
Biophys J. 1999 Nov;77(5):2750-63. doi: 10.1016/s0006-3495(99)77108-0.
7
Interaction between Asp-85 and the proton-releasing group in bacteriorhodopsin. A study of an O-like photocycle intermediate.细菌视紫红质中Asp-85与质子释放基团之间的相互作用。对一种O样光循环中间体的研究。
Biochemistry. 1997 Apr 8;36(14):4135-48. doi: 10.1021/bi962322e.
8
Energy coupling in an ion pump. The reprotonation switch of bacteriorhodopsin.离子泵中的能量偶联。细菌视紫红质的再质子化开关。
J Mol Biol. 1994 Nov 4;243(4):621-38. doi: 10.1016/0022-2836(94)90037-x.
9
A redirected proton pathway in the bacteriorhodopsin mutant Tyr-57-->Asp. Evidence for proton translocation without Schiff base deprotonation.细菌视紫红质突变体Tyr-57→Asp中的重定向质子途径。无席夫碱去质子化的质子转运证据。
J Biol Chem. 1994 Nov 18;269(46):28851-8.
10
Connectivity of the retinal Schiff base to Asp85 and Asp96 during the bacteriorhodopsin photocycle: the local-access model.细菌视紫红质光循环过程中视网膜席夫碱与Asp85和Asp96的连接性:局部可及模型
Biophys J. 1998 Sep;75(3):1455-65. doi: 10.1016/S0006-3495(98)74064-0.

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Properties of the stochastic energization-relaxation channel model for vectorial ion transport.矢量离子传输的随机能量激发-弛豫通道模型的特性
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Evidence for the first phase of the reprotonation switch of bacteriorhodopsin from time-resolved photovoltage and flash photolysis experiments on the photoreversal of the M-intermediate.来自对M中间体光逆转进行的时间分辨光电压和闪光光解实验的嗜盐菌视紫红质再质子化开关第一阶段的证据。
Biophys J. 1997 Dec;73(6):3171-81. doi: 10.1016/S0006-3495(97)78343-7.
7
A simple light-driven transmembrane proton pump.一种简单的光驱动跨膜质子泵。
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本文引用的文献

1
Distributed kinetics of the charge movements in bacteriorhodopsin: evidence for conformational substates.细菌视紫红质中电荷运动的分布式动力学:构象亚基的证据。
Biophys J. 1988 Apr;53(4):623-33. doi: 10.1016/S0006-3495(88)83141-2.
2
Bacteriorhodopsin D85N: three spectroscopic species in equilibrium.细菌视紫红质D85N:处于平衡状态的三种光谱物种。
Biochemistry. 1993 Feb 9;32(5):1332-7. doi: 10.1021/bi00056a019.
3
Gene replacement in Halobacterium halobium and expression of bacteriorhodopsin mutants.嗜盐菌中的基因替换及细菌视紫红质突变体的表达
Proc Natl Acad Sci U S A. 1993 Mar 1;90(5):1987-91. doi: 10.1073/pnas.90.5.1987.
4
Estimated acid dissociation constants of the Schiff base, Asp-85, and Arg-82 during the bacteriorhodopsin photocycle.细菌视紫红质光循环过程中席夫碱、天冬氨酸-85和精氨酸-82的估计酸解离常数。
Biophys J. 1993 Jul;65(1):124-30. doi: 10.1016/S0006-3495(93)81064-6.
5
Energy coupling in an ion pump. The reprotonation switch of bacteriorhodopsin.离子泵中的能量偶联。细菌视紫红质的再质子化开关。
J Mol Biol. 1994 Nov 4;243(4):621-38. doi: 10.1016/0022-2836(94)90037-x.
6
pH-induced structural changes in bacteriorhodopsin studied by Fourier transform infrared spectroscopy.傅里叶变换红外光谱法研究细菌视紫红质中pH诱导的结构变化。
Biophys J. 1994 Oct;67(4):1706-12. doi: 10.1016/S0006-3495(94)80644-7.
7
Inversion of proton translocation in bacteriorhodopsin mutants D85N, D85T, and D85,96N.细菌视紫红质突变体D85N、D85T和D85,96N中质子转运的反转
Biophys J. 1994 Oct;67(4):1682-90. doi: 10.1016/S0006-3495(94)80642-3.
8
Aspartic acid substitutions affect proton translocation by bacteriorhodopsin.天冬氨酸替代影响细菌视紫红质的质子转运。
Proc Natl Acad Sci U S A. 1988 Jun;85(12):4148-52. doi: 10.1073/pnas.85.12.4148.
9
Replacement of aspartic acid-96 by asparagine in bacteriorhodopsin slows both the decay of the M intermediate and the associated proton movement.细菌视紫红质中天冬氨酸-96被天冬酰胺取代会减缓M中间体的衰减以及相关的质子移动。
Proc Natl Acad Sci U S A. 1989 Apr;86(7):2167-71. doi: 10.1073/pnas.86.7.2167.
10
Aspartic acid-96 is the internal proton donor in the reprotonation of the Schiff base of bacteriorhodopsin.天冬氨酸-96是细菌视紫红质席夫碱再质子化过程中的内部质子供体。
Proc Natl Acad Sci U S A. 1989 Dec;86(23):9228-32. doi: 10.1073/pnas.86.23.9228.

细菌视紫红质突变体(天冬氨酸-85→天冬酰胺)的质子转运始于未质子化的席夫碱状态。

Proton transport by a bacteriorhodopsin mutant, aspartic acid-85-->asparagine, initiated in the unprotonated Schiff base state.

作者信息

Dickopf S, Alexiev U, Krebs M P, Otto H, Mollaaghababa R, Khorana H G, Heyn M P

机构信息

Department of Physics, Freie Universität Berlin, Germany.

出版信息

Proc Natl Acad Sci U S A. 1995 Dec 5;92(25):11519-23. doi: 10.1073/pnas.92.25.11519.

DOI:10.1073/pnas.92.25.11519
PMID:8524795
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC40433/
Abstract

At alkaline pH the bacteriorhodopsin mutant D85N, with aspartic acid-85 replaced by asparagine, is in a yellow form (lambda max approximately 405 nm) with a deprotonated Schiff base. This state resembles the M intermediate of the wild-type photocycle. We used time-resolved methods to show that this yellow form of D85N, which has an initially unprotonated Schiff base and which lacks the proton acceptor Asp-85, transports protons in the same direction as wild type when excited by 400-nm flashes. Photoexcitation leads in several milliseconds to the formation of blue (630 nm) and purple (580 nm) intermediates with a protonated Schiff base, which decay in tens of seconds to the initial state (400 nm). Experiments with pH indicator dyes show that at pH 7, 8, and 9, proton uptake occurs in about 5-10 ms and precedes the slow release (seconds). Photovoltage measurements reveal that the direction of proton movement is from the cytoplasmic to the extracellular side with major components on the millisecond and second time scales. The slowest electrical component could be observed in the presence of azide, which accelerates the return of the blue intermediate to the initial yellow state. Transport thus occurs in two steps. In the first step (milliseconds), the Schiff base is protonated by proton uptake from the cytoplasmic side, thereby forming the blue state. From the pH dependence of the amplitudes of the electrical and photocycle signals, we conclude that this reaction proceeds in a similar way as in wild type--i.e., via the internal proton donor Asp-96. In the second step (seconds) the Schiff base deprotonates, releasing the proton to the extracellular side.

摘要

在碱性pH条件下,细菌视紫红质突变体D85N(天冬氨酸-85被天冬酰胺取代)呈黄色形式(最大吸收波长约为405 nm),具有去质子化的席夫碱。这种状态类似于野生型光循环的M中间体。我们使用时间分辨方法表明,这种具有初始未质子化席夫碱且缺乏质子受体天冬氨酸-85的D85N黄色形式,在受到400 nm闪光激发时,与野生型一样向相同方向转运质子。光激发在几毫秒内导致形成具有质子化席夫碱的蓝色(630 nm)和紫色(580 nm)中间体,它们在几十秒内衰减至初始状态(400 nm)。使用pH指示剂染料的实验表明,在pH 7、8和9时,质子摄取发生在约5 - 10毫秒内,且先于缓慢释放(数秒)。光电压测量表明,质子移动方向是从细胞质侧到细胞外侧,主要成分出现在毫秒和秒时间尺度上。在叠氮化物存在下可以观察到最慢的电成分,它加速了蓝色中间体回到初始黄色状态。因此,转运分两步进行。第一步(毫秒),席夫碱通过从细胞质侧摄取质子而质子化,从而形成蓝色状态。从电信号和光循环信号幅度的pH依赖性,我们得出结论,该反应的进行方式与野生型类似——即通过内部质子供体天冬氨酸-96。第二步(秒),席夫碱去质子化,将质子释放到细胞外侧。