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为什么某些蛋白质结构如此常见?

Why are some proteins structures so common?

作者信息

Govindarajan S, Goldstein R A

机构信息

Department of Chemistry, University of Michigan, Ann Arbor 48109-1055, USA.

出版信息

Proc Natl Acad Sci U S A. 1996 Apr 16;93(8):3341-5. doi: 10.1073/pnas.93.8.3341.

DOI:10.1073/pnas.93.8.3341
PMID:8622938
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC39609/
Abstract

Many biological proteins are observed to fold into one of a limited number of structural motifs. By considering the requirements imposed on proteins by their need to fold rapidly, and the ease with which such requirements can be fulfilled as a function of the native structure, we can explain why certain structures are repeatedly observed among proteins with negligible sequence similarity. This work has implications for the understanding of protein sequence structure relationships as well as protein evolution.

摘要

许多生物蛋白质被观察到折叠成数量有限的几种结构基序之一。通过考虑蛋白质快速折叠的需求所带来的限制,以及这些需求作为天然结构的函数得以满足的难易程度,我们可以解释为什么在序列相似性可忽略不计的蛋白质中会反复观察到某些结构。这项工作对于理解蛋白质序列 - 结构关系以及蛋白质进化具有重要意义。

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本文引用的文献

1
Proteins with selected sequences fold into unique native conformation.具有特定序列的蛋白质会折叠成独特的天然构象。
Phys Rev Lett. 1994 Jun 13;72(24):3907-3910. doi: 10.1103/PhysRevLett.72.3907.
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Why are the same protein folds used to perform different functions?为什么相同的蛋白质折叠结构会被用于执行不同的功能?
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Kinematics and thermodynamics of a folding heteropolymer.折叠异质聚合物的运动学与热力学
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Folded proteins occur frequently in libraries of random amino acid sequences.折叠蛋白在随机氨基酸序列文库中频繁出现。
Proc Natl Acad Sci U S A. 1994 Mar 15;91(6):2146-50. doi: 10.1073/pnas.91.6.2146.
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Kinetics of protein folding. A lattice model study of the requirements for folding to the native state.蛋白质折叠动力学。对折叠成天然状态所需条件的晶格模型研究。
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Protein superfamilies and domain superfolds.蛋白质超家族和结构域超折叠。
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Phosphorescence reveals a continued slow annealing of the protein core following reactivation of Escherichia coli alkaline phosphatase.磷光现象揭示了大肠杆菌碱性磷酸酶重新激活后蛋白质核心持续缓慢的退火过程。
Biochemistry. 1995 Jan 31;34(4):1133-6. doi: 10.1021/bi00004a005.
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Funnels, pathways, and the energy landscape of protein folding: a synthesis.蛋白质折叠的漏斗、途径及能量景观:综述
Proteins. 1995 Mar;21(3):167-95. doi: 10.1002/prot.340210302.
10
Toward an outline of the topography of a realistic protein-folding funnel.迈向现实蛋白质折叠漏斗拓扑结构的概述。
Proc Natl Acad Sci U S A. 1995 Apr 11;92(8):3626-30. doi: 10.1073/pnas.92.8.3626.