• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

高密度DNA中间相的键取向有序、分子运动和自由能

Bond orientational order, molecular motion, and free energy of high-density DNA mesophases.

作者信息

Podgornik R, Strey H H, Gawrisch K, Rau D C, Rupprecht A, Parsegian V A

机构信息

Laboratory of Structural Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA.

出版信息

Proc Natl Acad Sci U S A. 1996 Apr 30;93(9):4261-6. doi: 10.1073/pnas.93.9.4261.

DOI:10.1073/pnas.93.9.4261
PMID:8633052
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC39523/
Abstract

By equilibrating condensed DNA arrays against reservoirs of known osmotic stress and examining them with several structural probes, it has been possible to achieve a detailed thermodynamic and structural characterization of the change between two distinct regions on the liquid-crystalline phase diagram: (i) a higher density hexagonally packed region with long-range bond orientational order in the plane perpendicular to the average molecular direction and (ii) a lower density cholesteric region with fluid-like positional order. X-ray scattering on highly ordered DNA arrays at high density and with the helical axis oriented parallel to the incoming beam showed a sixfold azimuthal modulation of the first-order diffraction peak that reflects the macroscopic bond-orientational order. Transition to the less-dense cholesteric phase through osmotically controlled swelling shows the loss of this bond orientational order, which had been expected from the change in optical birefringence patterns and which is consistent with a rapid onset of molecular positional disorder. This change in order was previously inferred from intermolecular force measurements and is now confirmed by 31P NMR. Controlled reversible swelling and compaction under osmotic stress, spanning a range of densities between approximately 120 mg/ml to approximately 600 mg/ml, allow measurement of the free-energy changes throughout each phase and at the phase transition, essential information for theories of liquid-crystalline states.

摘要

通过将凝聚的DNA阵列与已知渗透压的储库平衡,并使用几种结构探针进行检测,得以对液晶相图上两个不同区域之间的变化进行详细的热力学和结构表征:(i)在垂直于平均分子方向的平面内具有长程键取向有序的较高密度六方堆积区域,以及(ii)具有类流体位置有序的较低密度胆甾相区域。在高密度且螺旋轴平行于入射束的高度有序DNA阵列上进行的X射线散射显示,一阶衍射峰存在六重方位调制,这反映了宏观键取向有序。通过渗透压控制的膨胀转变为密度较低的胆甾相,显示出这种键取向有序的丧失,这从光学双折射图案的变化中可以预期,并且与分子位置无序的迅速出现一致。这种有序性的变化先前是从分子间力测量中推断出来的,现在通过31P NMR得到了证实。在渗透压下进行可控的可逆膨胀和压实,密度范围在约120 mg/ml至约600 mg/ml之间,使得能够测量每个相以及相变时的自由能变化,这是液晶态理论的重要信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c60/39523/bd163367bdce/pnas01516-0559-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c60/39523/46447d7c9a14/pnas01516-0557-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c60/39523/bd163367bdce/pnas01516-0559-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c60/39523/46447d7c9a14/pnas01516-0557-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c60/39523/bd163367bdce/pnas01516-0559-a.jpg

相似文献

1
Bond orientational order, molecular motion, and free energy of high-density DNA mesophases.高密度DNA中间相的键取向有序、分子运动和自由能
Proc Natl Acad Sci U S A. 1996 Apr 30;93(9):4261-6. doi: 10.1073/pnas.93.9.4261.
2
Positional, reorientational, and bond orientational order in DNA mesophases.DNA 中间相中的位置序、重取向序和键取向序。
Phys Rev Lett. 2001 Nov 19;87(21):218101. doi: 10.1103/PhysRevLett.87.218101. Epub 2001 Nov 1.
3
Watching molecules crowd: DNA double helices under osmotic stress.观察分子拥挤现象:渗透胁迫下的DNA双螺旋
Biophys Chem. 1995 Dec;57(1):111-21. doi: 10.1016/0301-4622(95)00058-6.
4
Continuity of states between the cholesteric → line hexatic transition and the condensation transition in DNA solutions.DNA溶液中胆甾相→线六方相转变与凝聚转变之间的状态连续性。
Sci Rep. 2014 Nov 5;4:6877. doi: 10.1038/srep06877.
5
Exclusion of alcohols from spermidine-DNA assemblies: probing the physical basis of preferential hydration.从亚精胺-DNA组装体中排除醇类:探究优先水合作用的物理基础。
Biochemistry. 2004 Jun 29;43(25):8272-80. doi: 10.1021/bi049559s.
6
DNA cholesteric pitch as a function of density and ionic strength.作为密度和离子强度函数的DNA胆甾相螺距
Biophys J. 2005 Oct;89(4):2552-7. doi: 10.1529/biophysj.105.064550. Epub 2005 Jul 22.
7
The diversity of the liquid ordered (Lo) phase of phosphatidylcholine/cholesterol membranes: a variable temperature multinuclear solid-state NMR and x-ray diffraction study.磷脂酰胆碱/胆固醇膜的有序液相(Lo)相的多样性:变温多核固态核磁共振和X射线衍射研究
Biophys J. 2006 Apr 1;90(7):2383-93. doi: 10.1529/biophysj.104.056499.
8
Order and interactions in DNA arrays: Multiscale molecular dynamics simulation.DNA 芯片中的有序结构和相互作用:多尺度分子动力学模拟。
Sci Rep. 2017 Jul 6;7(1):4775. doi: 10.1038/s41598-017-05109-2.
9
Roles of bond orientational ordering in glass transition and crystallization.键取向有序在玻璃化转变和结晶中的作用。
J Phys Condens Matter. 2011 Jul 20;23(28):284115. doi: 10.1088/0953-8984/23/28/284115. Epub 2011 Jun 27.
10
DNA cholesteric phases: the role of DNA molecular chirality and DNA-DNA electrostatic interactions.DNA胆甾相:DNA分子手性和DNA-DNA静电相互作用的作用
J Phys Chem B. 2008 Oct 9;112(40):12585-95. doi: 10.1021/jp801220p. Epub 2008 Sep 12.

引用本文的文献

1
Cell Division and Motility Enable Hexatic Order in Biological Tissues.细胞分裂和运动使生物组织呈现准晶序。
Phys Rev Lett. 2024 May 24;132(21):218402. doi: 10.1103/PhysRevLett.132.218402.
2
Special issue for Klaus Gawrisch.献给克劳斯·高里施的特刊。
Biophys J. 2023 Mar 21;122(6):E1-E8. doi: 10.1016/j.bpj.2023.02.022. Epub 2023 Mar 15.
3
Modelling and DNA topology of compact 2-start and 1-start chromatin fibres.紧凑的 2 转和 1 转染色质纤维的建模和 DNA 拓扑结构。

本文引用的文献

1
Dislocation loops and bond-orientational order in the Abrikosov flux-line lattice.阿布里科索夫磁通线晶格中的位错环与键取向序
Phys Rev B Condens Matter. 1990 Feb 1;41(4):1910-1920. doi: 10.1103/physrevb.41.1910.
2
Watching molecules crowd: DNA double helices under osmotic stress.观察分子拥挤现象:渗透胁迫下的DNA双螺旋
Biophys Chem. 1995 Dec;57(1):111-21. doi: 10.1016/0301-4622(95)00058-6.
3
Supramolecular ordering of DNA in the cholesteric liquid crystalline phase: an ultrastructural study.胆甾相液晶相中DNA的超分子有序排列:一项超微结构研究。
Nucleic Acids Res. 2019 Oct 10;47(18):9902-9924. doi: 10.1093/nar/gkz495.
4
Sticking and stacking: Persistent ordering of fragmented DNA analogs.粘贴与堆积:片段化DNA类似物的持续排序
Proc Natl Acad Sci U S A. 2018 Aug 28;115(35):8652-8654. doi: 10.1073/pnas.1810662115. Epub 2018 Aug 9.
5
Order and interactions in DNA arrays: Multiscale molecular dynamics simulation.DNA 芯片中的有序结构和相互作用:多尺度分子动力学模拟。
Sci Rep. 2017 Jul 6;7(1):4775. doi: 10.1038/s41598-017-05109-2.
6
Re-entrant cholesteric phase in DNA liquid-crystalline dispersion particles.DNA液晶分散颗粒中的再入胆甾相
J Biol Phys. 2017 Mar;43(1):45-68. doi: 10.1007/s10867-016-9433-4. Epub 2016 Dec 27.
7
Observation of the Chiral and Achiral Hexatic Phases of Self-assembled Micellar polymers.自组装胶束聚合物的手性和非手性六方相的观察。
Sci Rep. 2016 Aug 31;6:32313. doi: 10.1038/srep32313.
8
X-ray characterization of mesophases of human telomeric G-quadruplexes and other DNA analogues.人类端粒G-四链体及其他DNA类似物中间相的X射线表征
Sci Rep. 2016 Jun 2;6:27079. doi: 10.1038/srep27079.
9
Continuity of states between the cholesteric → line hexatic transition and the condensation transition in DNA solutions.DNA溶液中胆甾相→线六方相转变与凝聚转变之间的状态连续性。
Sci Rep. 2014 Nov 5;4:6877. doi: 10.1038/srep06877.
10
Gravitational symmetry breaking leads to a polar liquid crystal phase of microtubules in vitro.引力对称性破缺在体外导致微管的极性液晶相。
J Biol Phys. 2005 Dec;31(3-4):477-86. doi: 10.1007/s10867-005-7284-5.
Biophys J. 1993 Jul;65(1):56-72. doi: 10.1016/S0006-3495(93)81063-4.
4
Parametrization of direct and soft steric-undulatory forces between DNA double helical polyelectrolytes in solutions of several different anions and cations.几种不同阴离子和阳离子溶液中DNA双螺旋聚电解质之间直接和软空间波动力的参数化
Biophys J. 1994 Apr;66(4):962-71. doi: 10.1016/S0006-3495(94)80877-X.
5
Thermodynamics and equilibrium sedimentation analysis of the close approach of DNA molecules and a molecular ordering transition.DNA分子近距离接近的热力学与平衡沉降分析以及分子有序转变
Biopolymers. 1981 Jun;20(6):1305-28. doi: 10.1002/bip.1981.360200615.
6
Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices.离子溶液中聚电解质分子间排斥力的测量:平行DNA双螺旋间的水化力
Proc Natl Acad Sci U S A. 1984 May;81(9):2621-5. doi: 10.1073/pnas.81.9.2621.
7
The description of membrane lipid conformation, order and dynamics by 2H-NMR.通过2H-NMR对膜脂构象、有序性和动力学的描述。
Biochim Biophys Acta. 1983 Mar 21;737(1):117-71. doi: 10.1016/0304-4157(83)90015-1.
8
A 200 base pair region at the 5' end of the chicken adult beta-globin gene is accessible to nuclease digestion.鸡成年β-珠蛋白基因5'端的一个200个碱基对的区域可被核酸酶消化。
Cell. 1981 Nov;27(1 Pt 2):45-55. doi: 10.1016/0092-8674(81)90359-7.
9
A transition to a compact form of DNA in polymer solutions.在聚合物溶液中向紧密形式的DNA转变。
Proc Natl Acad Sci U S A. 1971 Aug;68(8):1886-90. doi: 10.1073/pnas.68.8.1886.
10
Osmotic stress for the direct measurement of intermolecular forces.用于直接测量分子间力的渗透压。
Methods Enzymol. 1986;127:400-16. doi: 10.1016/0076-6879(86)27032-9.