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通过异核弛豫测量和降低的谱密度映射探究肌动蛋白结合蛋白14T内的局部流动性。

Local mobility within villin 14T probed via heteronuclear relaxation measurements and a reduced spectral density mapping.

作者信息

Markus M A, Dayie K T, Matsudaira P, Wagner G

机构信息

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, USA.

出版信息

Biochemistry. 1996 Feb 13;35(6):1722-32. doi: 10.1021/bi951933o.

DOI:10.1021/bi951933o
PMID:8639651
Abstract

Villin 14T, a representative domain from the actin severing and bundling protein villin, binds calcium ions and actin monomers. To begin to understand the contributions of mobility to the villin-calcium and villin-actin interactions, relaxation rates for magnetization involving the amide nitrogens and protons have been measured for 15N-labeled villin 14T in solution. Although we have measured the complete set of rates required for a full spectral density map, difficulties in the accurate measurement of relaxation rates for antiphase coherence and two-spin order led us to consider a reduced mapping formalism. From the reduced spectral density map, a model-free analysis, or directly from the measured Nx,y relaxation rates, local variations in mobility along the backbone of villin 14T have been revealed. Fast motions are evident not only at the amino and carboxyl termini but also in the turn between strands beta 4 and beta 5 of the central beta-sheet and in the turn between helix alpha 3 and strand beta 7. Slower motions are suggested for the turn between strands beta 2 and beta 3. Motions on the microsecond to millisecond time scale have been probed directly by examining the dependence of the proton transverse relaxation rate on the spin-locking field strength. Leu11 shows a strong dependence on field strength, implying conformational exchange with a time constant of 125 +/- 69 microseconds. The backbone at the actin-binding interface appears to be rather rigid.

摘要

绒毛蛋白14T是肌动蛋白切断和捆绑蛋白绒毛蛋白的一个代表性结构域,它能结合钙离子和肌动蛋白单体。为了初步了解迁移率对绒毛蛋白-钙和绒毛蛋白-肌动蛋白相互作用的贡献,我们测量了溶液中15N标记的绒毛蛋白14T涉及酰胺氮和质子的磁化弛豫率。尽管我们已经测量了完整光谱密度图所需的全套速率,但反相相干和双自旋序弛豫率的精确测量存在困难,这促使我们考虑一种简化的映射形式。从简化的光谱密度图、无模型分析或直接从测量的Nx,y弛豫率中,揭示了绒毛蛋白14T主链上迁移率的局部变化。快速运动不仅在氨基和羧基末端明显,而且在中央β折叠的β4和β5链之间的转角以及α3螺旋和β7链之间的转角处也很明显。β2和β3链之间的转角处的运动较慢。通过研究质子横向弛豫率对自旋锁定场强的依赖性,直接探测了微秒到毫秒时间尺度上的运动。Leu11对场强有很强的依赖性,这意味着构象交换的时间常数为125±69微秒。肌动蛋白结合界面处的主链似乎相当刚性。

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