Wyss D F, Dayie K T, Wagner G
Procept Inc., Cambridge, Massachusetts 02139, USA.
Protein Sci. 1997 Mar;6(3):534-42. doi: 10.1002/pro.5560060303.
We have used 15N NMR relaxation experiments to probe, for the glycosylated human CD2 adhesion domain, the overall molecular motion, as well as very fast nanosecond-picosecond (ns-ps) and slow millisecond-microsecond (ms-microsecond) internal motions. Using a novel analysis method that considers all residues, we obtained a correlation time for the overall motion of 9.5 +/- 0.3 ns. Surprisingly, we found a large contiguous patch of residues in the counterreceptor (CD58) binding site of human CD2 exhibiting slow conformational exchange motions (ms-microsecond). On the other hand, almost none of the residues of the CD58 binding side display fast (ns-ps) internal motions of amplitudes larger than what is seen for well-ordered regions of the structure. Residues close to the N-glycosylation site, and the first N-acetylglucosamine of the high mannose glycan are as rigid as the protein core. Residues conserved in the immunoglobulin superfamily V-set domain are generally very rigid.
我们使用了¹⁵N NMR弛豫实验来探究糖基化人CD2黏附结构域的整体分子运动,以及极快的纳秒至皮秒(ns - ps)和较慢的毫秒至微秒(ms - 微秒)内部运动。通过使用一种考虑所有残基的新型分析方法,我们获得了整体运动的相关时间为9.5±0.3纳秒。令人惊讶的是,我们发现在人CD2的反受体(CD58)结合位点存在一大片连续的残基,呈现出缓慢的构象交换运动(毫秒至微秒)。另一方面,CD58结合侧几乎没有残基表现出比结构有序区域更大幅度的快速(纳秒至皮秒)内部运动。靠近N - 糖基化位点的残基以及高甘露糖聚糖的第一个N - 乙酰葡糖胺与蛋白质核心一样刚性。免疫球蛋白超家族V - 集结构域中保守的残基通常非常刚性。