Hartmann H, Zinser S, Komninos P, Schneider R T, Nienhaus G U, Parak F
Institute für Molekulare Biophysik, Johannes-Gutenberg University, Mainz, Germany.
Proc Natl Acad Sci U S A. 1996 Jul 9;93(14):7013-6. doi: 10.1073/pnas.93.14.7013.
The x-ray structure of carbon monoxide (CO)-ligated myoglobin illuminated during data collection by a laser diode at the wavelength lambda = 690 nm has been determined to a resolution of 1.7 A at T = 36 K. For comparison, we also measured data sets of deoxymyoglobin and CO-ligated myoglobin. In the photon-induced structure the electron density associated with the CO ligand can be described by a tube extending from the iron into the heme pocket over more than 4 A. This density can be interpreted by two discrete positions of the CO molecule. One is close to the heme iron and can be identified to be bound CO. In the second, the CO is dissociated from the heme iron and lies on top of pyrrole ring C. At our experimental conditions the overall structure of myoglobin in the metastable state is close to the structure of a CO-ligated molecule. However, the iron has essentially relaxed into the position of deoxymyoglobin. We compare our results with those of Schlichting el al. [Schlichting, I., Berendzen, J., Phillips, G. N., Jr., & Sweet, R. M. (1994) Nature 317, 808-812], who worked with the myoglobin mutant (D122N) that crystallizes in the space group P6 and Teng et al. [Teng, T. Y., Srajer, V. & Moffat, K. (1994) Nat. Struct. Biol. 1, 701-705], who used native myoglobin crystals of the space group P2(1). Possible reasons for the structural differences are discussed.
在波长λ = 690 nm的激光二极管进行数据收集期间,已测定了一氧化碳(CO)结合的肌红蛋白在T = 36 K时的X射线结构,分辨率达到1.7 Å。作为比较,我们还测量了脱氧肌红蛋白和CO结合的肌红蛋白的数据集。在光诱导结构中,与CO配体相关的电子密度可以用一根从铁延伸到血红素口袋中超过4 Å的管来描述。这种密度可以由CO分子的两个离散位置来解释。一个位置靠近血红素铁,可以确定为结合的CO。在第二个位置,CO从血红素铁上解离,位于吡咯环C的上方。在我们的实验条件下,处于亚稳态的肌红蛋白的整体结构接近CO结合分子的结构。然而,铁基本上已经松弛到脱氧肌红蛋白的位置。我们将我们的结果与施利希廷等人[施利希廷,I.,贝伦岑,J.,菲利普斯,G. N.,Jr.,& 斯威特,R. M.(1994年)《自然》317,808 - 812]的结果进行了比较,他们研究的是在空间群P6中结晶的肌红蛋白突变体(D122N),以及滕等人[滕,T. Y.,斯拉杰尔,V. & 莫法特,K.(1994年)《自然结构生物学》1,701 - 705]的结果,他们使用的是空间群P2(1)的天然肌红蛋白晶体。讨论了结构差异的可能原因。