Mushegian A R, Fullner K J, Koonin E V, Nester E W
Department of Microbiology, University of Washington, Seattle, WA 98195, USA.
Proc Natl Acad Sci U S A. 1996 Jul 9;93(14):7321-6. doi: 10.1073/pnas.93.14.7321.
We describe a conserved family of bacterial gene products that includes the VirB1 virulence factor encoded by tumor-inducing plasmids of Agrobacterium spp., proteins involved in conjugative DNA transfer of broad-host-range bacterial plasmids, and gene products that may be involved in invasion by Shigella spp. and Salmonella enterica. Sequence analysis and structural modeling show that the proteins in this group are related to chicken egg white lysozyme and are likely to adopt a lysozyme-like structural fold. Based on their similarity to lysozyme, we predict that these proteins have glycosidase activity. Iterative data base searches with three conserved sequence motifs from this protein family detect a more distant relationship to bacterial and bacteriophage lytic transglycosylases, and goose egg white lysozyme. Two acidic residues in the VirB1 protein of Agrobacterium tumefaciens form a putative catalytic dyad, Each of these residues was changed into the corresponding amide by site-directed mutagenesis. Strains of A. tumefaciens that express mutated VirB1 proteins have a significantly reduced virulence. We hypothesize that many bacterial proteins involved in export of macromolecules belong to a widespread class of hydrolases and cleave beta-1,4-glycosidic bonds as part of their function.
我们描述了一个保守的细菌基因产物家族,其中包括根癌农杆菌肿瘤诱导质粒编码的VirB1毒力因子、参与广宿主范围细菌质粒接合性DNA转移的蛋白质,以及可能参与志贺氏菌属和肠炎沙门氏菌侵袭的基因产物。序列分析和结构建模表明,该组中的蛋白质与鸡卵清溶菌酶相关,并且可能采用溶菌酶样的结构折叠。基于它们与溶菌酶的相似性,我们预测这些蛋白质具有糖苷酶活性。用该蛋白质家族的三个保守序列基序进行迭代数据库搜索,发现与细菌和噬菌体裂解转糖基酶以及鹅卵清溶菌酶有更远的关系。根癌农杆菌VirB1蛋白中的两个酸性残基形成一个假定的催化二元组,通过定点诱变将这些残基中的每一个都变成了相应的酰胺。表达突变型VirB1蛋白的根癌农杆菌菌株的毒力显著降低。我们推测,许多参与大分子输出的细菌蛋白质属于一类广泛存在的水解酶,并在其功能中裂解β-1,4-糖苷键。