Durell S R, Wallqvist A
Laboratory of Mathematical Biology, National Cancer Institute, National Institutes of Health, Bethesda 20892, Maryland, USA.
Biophys J. 1996 Oct;71(4):1695-706. doi: 10.1016/S0006-3495(96)79371-2.
Molecular dynamics simulations are used to model the transfer thermodynamics of krypton from the gas phase into water. Extra long, nanosecond simulations are required to reduce the statistical uncertainty of the calculated "solvation" enthalpy to an acceptable level. Thermodynamic integration is used to calculate the "solvation" free energy, which together with the enthalpy is used to calculate the "solvation" entropy. A comparison series of simulations are conducted using a single Lennard-Jones sphere model of water to identify the contribution of hydrogen bonding to the thermodynamic quantities. In contrast to the classical "iceberg" model of hydrophobic hydration, the favorable enthalpy change for the transfer process at room temperature is found to be due primarily to the strong van der Waals interaction between the solute and solvent. Although some stabilization of hydrogen bonding does occur in the solvation shell, this is overshadowed by a destabilization due to packing constraints. Similarly, whereas some of the unfavorable change in entropy is attributed to the reduced rotational motion of the solvation shell waters, the major component is due to a decrease in the number of positional arrangements associated with the translational motions.
分子动力学模拟用于对氪从气相转移到水中的热力学过程进行建模。需要进行超长的纳秒级模拟,以将计算出的“溶剂化”焓的统计不确定性降低到可接受的水平。采用热力学积分来计算“溶剂化”自由能,该自由能与焓一起用于计算“溶剂化”熵。使用单一的水的 Lennard-Jones 球模型进行了一系列比较模拟,以确定氢键对热力学量的贡献。与经典的疏水水合“冰山”模型不同,发现在室温下转移过程中有利的焓变主要是由于溶质和溶剂之间强烈的范德华相互作用。尽管在溶剂化层中确实发生了一些氢键的稳定作用,但由于堆积限制导致的不稳定作用使其黯然失色。同样,虽然熵的一些不利变化归因于溶剂化层水分子旋转运动的减少,但主要成分是由于与平移运动相关的位置排列数量的减少。