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哈维氏弧菌醛脱氢酶的结晶及初步X射线分析

Crystallization and preliminary X-ray analysis of aldehyde dehydrogenase from Vibrio harveyi.

作者信息

Croteau N, Vedadi M, Delarge M, Meighen E, Abu-Abed M, Howell P L, Vrielink A

机构信息

Biochemistry Department, Montréal Joint Center for Structural Biology, McGill University, Montréal, Québec, Canada.

出版信息

Protein Sci. 1996 Oct;5(10):2130-2. doi: 10.1002/pro.5560051022.

Abstract

Aldehyde dehydrogenase from Vibrio harveyi catalyzes the oxidation of long-chain aliphatic aldehydes to acids. The enzyme is unique among the family of aldehyde dehydrogenases in that it exhibits much higher specificity for the cofactor NADP+ than for NAD+. The sequence of this form of the enzyme varies significantly from the NAD+ dependent forms, suggesting differences in the three-dimensional structure that may be correlated to cofactor specificity. Crystals of the enzyme have been grown both in the presence and absence of NADP+ using the hanging drop vapor diffusion technique. In order to improve crystal size and quality, iterative seeding techniques were employed. The crystals belong to space group P2(1), with unit cell dimensions a = 79.4 A, b = 131.1 A, c = 92.2 A, and beta = 92.4 degrees. Freezing the crystal to 100 K has enabled a complete set of data to be collected using a rotating anode source (lambda = 1.5418 A). The crystals diffract to a minimum d-spacing of 2.6 A resolution. Based on density calculations, two homodimers of molecular weight 110 kDa are estimated to be present in the asymmetric unit. Self-rotation functions show the presence of 3 noncrystallographic twofold symmetry axes.

摘要

哈维弧菌的乙醛脱氢酶催化长链脂肪醛氧化为酸。该酶在乙醛脱氢酶家族中是独特的,因为它对辅因子NADP⁺的特异性远高于对NAD⁺的特异性。这种形式的酶的序列与依赖NAD⁺的形式有很大差异,这表明三维结构上的差异可能与辅因子特异性相关。使用悬滴气相扩散技术,在有和没有NADP⁺的情况下都培养出了该酶的晶体。为了提高晶体尺寸和质量,采用了迭代接种技术。晶体属于空间群P2(1),晶胞参数a = 79.4 Å,b = 131.1 Å,c = 92.2 Å,β = 92.4°。将晶体冷冻至100 K后,使用旋转阳极源(λ = 1.5418 Å)收集到了完整的数据集。晶体的衍射分辨率达到最小d间距为2.6 Å。基于密度计算,估计不对称单元中存在两个分子量为110 kDa的同型二聚体。自旋转函数显示存在3个非晶体学二重对称轴。

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