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代谢途径集合:最新进展。

The metabolic pathway collection: an update.

作者信息

Selkov E, Galimova M, Goryanin I, Gretchkin Y, Ivanova N, Komarov Y, Maltsev N, Mikhailova N, Nenashev V, Overbeek R, Panyushkina E, Pronevitch L, Selkov E

机构信息

1 Institute of Theoretical and Experimental Biophysics, Russian Academy of Sciences, 142292 Pushchino, Russia.

出版信息

Nucleic Acids Res. 1997 Jan 1;25(1):37-8. doi: 10.1093/nar/25.1.37.

Abstract

The Metabolic Pathway Collection from EMP is an extraction of data from the larger Enzymes and Metabolic Pathways database (EMP). This extraction has been made publicly available in the hope that others will find it useful for a variety of purposes. The original release in October 1995 contained 1814 distinct pathways. The current collection contains 2180. Metabolic reconstructions for the first completely sequenced organisms-Haemophilus influenzae,Mycoplasma genitalium,Saccharomyces cerevisiaeandMethanococcus janaschii-are all included in the current release. All of the pathways in the collections are available as ASCII files in the form generated by the main curator, Evgeni Selkov. In addition, we are offering a more structured encoding of a subset of the collection; our initial release of this subcollection includes all of the pathways inMycoplasma genitalium, and we ultimately intend to offer the entire collection in this form as well.

摘要

EMP代谢途径集合是从更大的酶与代谢途径数据库(EMP)中提取的数据。此次提取已公开发布,希望其他人能发现它对各种目的有用。1995年10月的原始版本包含1814条不同的途径。当前集合包含2180条。首个完全测序生物——流感嗜血杆菌、生殖支原体、酿酒酵母和嗜压甲烷球菌的代谢重建均包含在当前版本中。集合中的所有途径都以主要馆长叶夫根尼·塞尔科夫生成的ASCII文件形式提供。此外,我们正在提供该集合子集的更结构化编码;这个子集合的初始版本包括生殖支原体中的所有途径,我们最终也打算以这种形式提供整个集合。

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