Hu S H, Peek J A, Rattigan E, Taylor R K, Martin J L
Centre for Drug Design and Development, University of Queensland, Brisbane, Australia.
J Mol Biol. 1997 Apr 25;268(1):137-46. doi: 10.1006/jmbi.1997.0940.
The efficient and correct folding of bacterial disulfide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. In the pathogenic bacterium Vibrio cholerae, the DsbA homolog (TcpG) is responsible for the folding, maturation and secretion of virulence factors. Mutants in which the tcpg gene has been inactivated are avirulent; they no longer produce functional colonisation pili and they no longer secrete cholera toxin. TcpG is thus a suitable target for inhibitors that could counteract the virulence of this organism, thereby preventing the symptoms of cholera. The crystal structure of oxidized TcpG (refined at a resolution of 2.1 A) serves as a starting point for the rational design of such inhibitors. As expected, TcpG has the same fold as E. coli DsbA, with which it shares approximately 40% sequence identity. In addition, the characteristic surface features of DsbA are present in TcpG, supporting the notion that these features play a functional role. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA. The identification of the structural and surface features that are retained or are divergent in TcpG provides a useful assessment of their functional importance in these protein folding catalysts and is an important prerequisite for the design of TcpG inhibitors.
细菌中二硫键结合蛋白在体内的高效正确折叠依赖于一类周质氧化还原酶蛋白,这类蛋白被称为DsbA(以大肠杆菌中的该酶命名)。在病原菌霍乱弧菌中,DsbA同源物(TcpG)负责毒力因子的折叠、成熟和分泌。tcpg基因失活的突变体无毒力;它们不再产生功能性的定植菌毛,也不再分泌霍乱毒素。因此,TcpG是抑制剂的合适靶点,这些抑制剂可以抵消该生物体的毒力,从而预防霍乱症状。氧化型TcpG的晶体结构(分辨率为2.1 Å)是合理设计此类抑制剂的起点。正如预期的那样,TcpG与大肠杆菌DsbA具有相同的折叠结构,它们的序列同一性约为40%。此外,DsbA的特征性表面特征也存在于TcpG中,这支持了这些特征发挥功能作用的观点。虽然TcpG和DsbA的整体结构相似,且表面特征在TcpG中得以保留,但仍存在显著差异。例如,DsbA中一个三残基环导致了活性位点螺旋的扭结,而在TcpG中是由一个脯氨酸引起的(在这方面使TcpG更类似于硫氧还蛋白)。此外,由于六个残基的缺失,TcpG中提议的肽结合槽与DsbA相比大幅缩短。而且,TcpG的疏水口袋更浅,酸性区域比大肠杆菌DsbA的小得多。确定TcpG中保留或不同的结构和表面特征,有助于评估它们在这些蛋白质折叠催化剂中的功能重要性,这是设计TcpG抑制剂的重要前提。