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DsbA蛋白及其致病性相关底物的结构生物信息学分析

Structural bioinformatic analysis of DsbA proteins and their pathogenicity associated substrates.

作者信息

Santos-Martin Carlos, Wang Geqing, Subedi Pramod, Hor Lilian, Totsika Makrina, Paxman Jason John, Heras Begoña

机构信息

Department of Biochemistry and Genetics, La Trobe Institute of Molecular Science, La Trobe University, Melbourne, Australia.

Centre for Immunology and Infection Control, School of Biomedical Sciences, Queensland University of Technology, Brisbane, Australia.

出版信息

Comput Struct Biotechnol J. 2021 Aug 14;19:4725-4737. doi: 10.1016/j.csbj.2021.08.018. eCollection 2021.

Abstract

The disulfide bond (DSB) forming system and in particular DsbA, is a key bacterial oxidative folding catalyst. Due to its role in promoting the correct assembly of a wide range of virulence factors required at different stages of the infection process, DsbA is a master virulence rheostat, making it an attractive target for the development of new virulence blockers. Although DSB systems have been extensively studied across different bacterial species, to date, little is known about how DsbA oxidoreductases are able to recognize and interact with such a wide range of substrates. This review summarizes the current knowledge on the DsbA enzymes, with special attention on their interaction with the partner oxidase DsbB and substrates associated with bacterial virulence. The structurally and functionally diverse set of bacterial proteins that rely on DsbA-mediated disulfide bond formation are summarized. Local sequence and secondary structure elements of these substrates are analyzed to identify common elements recognized by DsbA enzymes. This not only provides information on protein folding systems in bacteria but also offers tools for identifying new DsbA substrates and informs current efforts aimed at developing DsbA targeted anti-microbials.

摘要

二硫键(DSB)形成系统,尤其是DsbA,是一种关键的细菌氧化折叠催化剂。由于其在促进感染过程不同阶段所需的多种毒力因子正确组装方面的作用,DsbA是一种主要的毒力调节器,使其成为开发新型毒力阻断剂的有吸引力的靶点。尽管DSB系统已在不同细菌物种中得到广泛研究,但迄今为止,关于DsbA氧化还原酶如何能够识别并与如此广泛的底物相互作用,人们知之甚少。本综述总结了目前关于DsbA酶的知识,特别关注它们与伴侣氧化酶DsbB以及与细菌毒力相关的底物的相互作用。总结了依赖DsbA介导的二硫键形成的结构和功能多样的细菌蛋白组。分析这些底物的局部序列和二级结构元件,以识别DsbA酶识别的共同元件。这不仅提供了关于细菌中蛋白质折叠系统的信息,还提供了识别新的DsbA底物的工具,并为当前旨在开发靶向DsbA的抗菌药物的努力提供了信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/20c6/8405906/6add9d3568b2/ga1.jpg

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