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埃立克体属groESL热休克操纵子的PCR扩增及核苷酸序列比较

PCR amplification and comparison of nucleotide sequences from the groESL heat shock operon of Ehrlichia species.

作者信息

Sumner J W, Nicholson W L, Massung R F

机构信息

Viral and Rickettsial Zoonoses Branch, Centers for Disease Control and Prevention, Atlanta, Georgia 30333, USA.

出版信息

J Clin Microbiol. 1997 Aug;35(8):2087-92. doi: 10.1128/jcm.35.8.2087-2092.1997.

Abstract

Degenerate PCR primers derived from conserved regions of the eubacterial groESL heat shock operon were used to amplify groESL sequences of Ehrlichia equi, Ehrlichia phagocytophila, the agent of human granulocytic ehrlichiosis (HGE), Ehrlichia canis, Bartonella henselae, and Rickettsia rickettsii. The groESL nucleotide sequences were less conserved than the previously determined 16S rRNA gene sequences of these bacteria. A phylogenetic tree derived from deduced GroEL amino acid sequences was similar to trees based on 16S rRNA gene sequences. Nucleotide sequences obtained from clinical samples containing E. equi, E. phagocytophila, or the HGE agent were very similar (99.9 to 99.0% identity), and the deduced amino acid sequences were identical. Some divergence was evident between nucleotide sequences amplified from samples originating from the United States (E. equi and the HGE agent) and sequences from the European species, E. phagocytophila. A single pair of PCR primers derived from these sequences was used to detect E. chaffeensis and HGE agent DNA in blood samples from human patients with ehrlichiosis.

摘要

从真细菌groESL热休克操纵子保守区域衍生的简并PCR引物,用于扩增马埃立克体、嗜吞噬细胞埃立克体(人类粒细胞埃立克体病病原体)、犬埃立克体、汉赛巴尔通体和立氏立克次体的groESL序列。groESL核苷酸序列的保守性低于这些细菌先前测定的16S rRNA基因序列。从推导的GroEL氨基酸序列得出的系统发育树与基于16S rRNA基因序列的树相似。从含有马埃立克体、嗜吞噬细胞埃立克体或人类粒细胞埃立克体病病原体的临床样本中获得的核苷酸序列非常相似(同一性为99.9%至99.0%),推导的氨基酸序列相同。从美国样本(马埃立克体和人类粒细胞埃立克体病病原体)扩增的核苷酸序列与欧洲物种嗜吞噬细胞埃立克体的序列之间存在一些明显差异。从这些序列衍生的一对PCR引物用于检测埃立克体病患者血液样本中的查菲埃立克体和人类粒细胞埃立克体病病原体DNA。

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