• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

内含子“滑动”与内含子位置的多样性

Intron "sliding" and the diversity of intron positions.

作者信息

Stoltzfus A, Logsdon J M, Palmer J D, Doolittle W F

机构信息

Canadian Institute for Advanced Research Program in Evolutionary Biology, and Department of Biochemistry, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4H7.

出版信息

Proc Natl Acad Sci U S A. 1997 Sep 30;94(20):10739-44. doi: 10.1073/pnas.94.20.10739.

DOI:10.1073/pnas.94.20.10739
PMID:9380704
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC23469/
Abstract

Alignments of homologous genes typically reveal a great diversity of intron locations, far more than could fit comfortably in a single gene. Thus, a minority of these intron positions could be inherited from a single ancestral gene, but the larger share must be attributed to subsequent events of intron gain or intron "sliding" (movement from one position to another within a gene). Intron sliding has been argued from cases of discordant introns and from putative spatial clustering of intron positions. A list of 32 cases of discordant introns is presented here. Most of these cases are found to be artefactual. The spatial and phylogenetic distributions of intron positions from five published compilations of gene data, comprising 205 intron positions, have been examined systematically for evidence of intron sliding. The results suggest that sliding, if it occurs at all, has contributed little to the diversity of intron positions.

摘要

同源基因的比对通常显示出内含子位置的巨大多样性,远远超过单个基因所能容纳的范围。因此,这些内含子位置中少数可能继承自单个祖先基因,但更大比例的内含子位置必须归因于随后的内含子获得事件或内含子“滑动”(在基因内从一个位置移动到另一个位置)。从不一致内含子的情况以及内含子位置的假定空间聚类中可以看出内含子滑动现象。这里列出了32个不一致内含子的案例。发现这些案例中的大多数都是人为造成的。系统地检查了来自五份已发表的基因数据汇编(包含205个内含子位置)的内含子位置的空间和系统发育分布,以寻找内含子滑动的证据。结果表明,即使存在滑动现象,它对内含子位置多样性的贡献也很小。

相似文献

1
Intron "sliding" and the diversity of intron positions.内含子“滑动”与内含子位置的多样性
Proc Natl Acad Sci U S A. 1997 Sep 30;94(20):10739-44. doi: 10.1073/pnas.94.20.10739.
2
Some novel intron positions in conserved Drosophila genes are caused by intron sliding or tandem duplication.一些在保守的果蝇基因中的新内含子位置是由内含子滑动或串联重复引起的。
BMC Evol Biol. 2010 May 26;10:156. doi: 10.1186/1471-2148-10-156.
3
Generation of a database containing discordant intron positions in eukaryotic genes (MIDB).真核生物基因中不一致内含子位置数据库(MIDB)的生成。
Bioinformatics. 2001 Aug;17(8):671-5. doi: 10.1093/bioinformatics/17.8.671.
4
Splice Sites Seldom Slide: Intron Evolution in Oomycetes.剪接位点很少滑动:卵菌纲中的内含子进化
Genome Biol Evol. 2016 Aug 25;8(8):2340-50. doi: 10.1093/gbe/evw157.
5
How Common Is Parallel Intron Gain? Rapid Evolution Versus Independent Creation in Recently Created Introns in Daphnia.在溞类中,最近产生的内含子中普遍存在平行内含子增益吗?快速进化与独立产生的比较。
Mol Biol Evol. 2016 Aug;33(8):1902-6. doi: 10.1093/molbev/msw091. Epub 2016 May 10.
6
Hypervariable and highly divergent intron-exon organizations in the chordate Oikopleura dioica.尾索动物住囊虫(Oikopleura dioica)中高度可变且差异极大的内含子-外显子组织。
J Mol Evol. 2004 Oct;59(4):448-57. doi: 10.1007/s00239-004-2636-5.
7
Alternative splicing: a missing piece in the puzzle of intron gain.可变剪接:内含子获得之谜中缺失的一块。
Proc Natl Acad Sci U S A. 2008 May 20;105(20):7223-8. doi: 10.1073/pnas.0802941105. Epub 2008 May 7.
8
Large-scale tRNA intron transposition in the archaeal order Thermoproteales represents a novel mechanism of intron gain.在古菌门的高温栖热菌目中大规模的 tRNA 内含子转位代表了一种新的内含子获得机制。
Mol Biol Evol. 2010 Oct;27(10):2233-43. doi: 10.1093/molbev/msq111. Epub 2010 Apr 29.
9
Intron evolution in Saccharomycetaceae.酵母科的内含子进化
Genome Biol Evol. 2014 Sep;6(9):2543-56. doi: 10.1093/gbe/evu196.
10
Formation of new genes explains lower intron density in mammalian Rhodopsin G protein-coupled receptors.新基因的形成解释了哺乳动物视紫红质G蛋白偶联受体中较低的内含子密度。
Mol Phylogenet Evol. 2007 Jun;43(3):864-80. doi: 10.1016/j.ympev.2006.11.007. Epub 2006 Nov 17.

引用本文的文献

1
Genomic and genetic insights into Mendel's pea genes.对孟德尔豌豆基因的基因组和遗传学见解。
Nature. 2025 Apr 23. doi: 10.1038/s41586-025-08891-6.
2
SimSpliceEvol2: alternative splicing-aware simulation of biological sequence evolution and transcript phylogenies.SimSpliceEvol2:具有剪接体识别功能的生物序列进化和转录系统发育模拟。
BMC Bioinformatics. 2024 Jul 11;25(1):235. doi: 10.1186/s12859-024-05853-z.
3
Where the minor things are: a pan-eukaryotic survey suggests neutral processes may explain much of minor intron evolution.微观世界的奥秘:泛真核生物调查表明,中性过程可能解释了大部分内含子的进化。
Nucleic Acids Res. 2023 Nov 10;51(20):10884-10908. doi: 10.1093/nar/gkad797.
4
Development of Intron Polymorphism Markers and Their Association With Fatty Acid Component Variation in Oil Palm.油棕内含子多态性标记的开发及其与脂肪酸成分变异的关联
Front Plant Sci. 2022 Jun 2;13:885418. doi: 10.3389/fpls.2022.885418. eCollection 2022.
5
Bi-alignments with affine gaps costs.带仿射空位罚分的双序列比对
Algorithms Mol Biol. 2022 May 16;17(1):10. doi: 10.1186/s13015-022-00219-7.
6
The Evolution of Hemocyanin Genes in Caenogastropoda: Gene Duplications and Intron Accumulation in Highly Diverse Gastropods.头足纲血蓝蛋白基因的进化:高度多样化腹足纲动物中的基因复制和内含子积累。
J Mol Evol. 2021 Dec;89(9-10):639-655. doi: 10.1007/s00239-021-10036-y. Epub 2021 Nov 10.
7
An Intron of Invertebrate Microphthalmia Transcription Factor Gene Is Evolved from a Longer Ancestral Sequence.无脊椎动物小眼畸形转录因子基因的一个内含子由更长的祖先序列进化而来。
Evol Bioinform Online. 2021 Jan 22;17:1176934320988558. doi: 10.1177/1176934320988558. eCollection 2021.
8
Is there any intron sliding in mammals?哺乳动物中存在内含子滑动吗?
BMC Evol Biol. 2020 Dec 11;20(1):164. doi: 10.1186/s12862-020-01726-0.
9
Comprehensive genomic analyses with 115 plastomes from algae to seed plants: structure, gene contents, GC contents, and introns.综合基因组分析 115 个藻类到种子植物的质体基因组:结构、基因组成、GC 含量和内含子。
Genes Genomics. 2020 May;42(5):553-570. doi: 10.1007/s13258-020-00923-x. Epub 2020 Mar 21.
10
Comparative and evolutionary analyses of the divergence of plant oligosaccharyltransferase STT3 isoforms.植物寡糖基转移酶STT3亚型差异的比较与进化分析
FEBS Open Bio. 2020 Mar;10(3):468-483. doi: 10.1002/2211-5463.12804. Epub 2020 Feb 19.

本文引用的文献

1
Molecular evolution: slippery introns and globin gene evolution.分子进化:可变剪接内含子与珠蛋白基因进化
Curr Biol. 1993 Apr 1;3(4):215-7. doi: 10.1016/0960-9822(93)90336-m.
2
The porcine skeletal muscle ryanodine receptor gene structure coding region 1 to 10614 harbouring 71 exons.猪骨骼肌兰尼碱受体基因结构的编码区1至10614,包含71个外显子。
Anim Genet. 1996 Oct;27(5):297-304. doi: 10.1111/j.1365-2052.1996.tb00973.x.
3
Detecting heterogeneity of substitution along DNA and protein sequences.检测DNA和蛋白质序列中替换的异质性。
Genetics. 1996 May;143(1):589-602. doi: 10.1093/genetics/143.1.589.
4
Translocation events in the evolution of aminoacyl-tRNA synthetases.氨酰-tRNA合成酶进化过程中的易位事件。
Proc Natl Acad Sci U S A. 1996 Aug 6;93(16):8485-9. doi: 10.1073/pnas.93.16.8485.
5
The gene encoding mouse intestinal trefoil factor: structural organization, partial sequence analysis and mapping to murine chromosome 17q.编码小鼠肠三叶因子的基因:结构组织、部分序列分析及定位于小鼠染色体17q
Gene. 1996 Jun 1;171(2):249-53. doi: 10.1016/0378-1119(96)00074-1.
6
Evolutionary history of introns in a multidomain globin gene.多结构域血红蛋白基因内含子的进化史
J Mol Evol. 1996 Jun;42(6):641-7. doi: 10.1007/BF02338797.
7
Methods for evaluating exon-protein correspondences.评估外显子与蛋白质对应关系的方法。
Comput Appl Biosci. 1995 Oct;11(5):509-15. doi: 10.1093/bioinformatics/11.5.509.
8
The Giardia lamblia actin gene and the phylogeny of eukaryotes.贾第虫肌动蛋白基因与真核生物系统发育
J Mol Evol. 1995 Dec;41(6):841-9. doi: 10.1007/BF00173163.
9
Structure determination and evolution of the chicken cDNA and gene encoding prepropancreatic polypeptide.
Gene. 1993 Aug 25;130(2):183-9. doi: 10.1016/0378-1119(93)90418-3.
10
On the ancient nature of introns.论内含子的古老性质。
Gene. 1993 Dec 15;135(1-2):137-44. doi: 10.1016/0378-1119(93)90058-b.