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二甲基亚砜还原酶与二甲基亚砜复合物的高分辨率晶体结构。

The high resolution crystal structure of DMSO reductase in complex with DMSO.

作者信息

McAlpine A S, McEwan A G, Bailey S

机构信息

CCLRC Daresbury Laboratory, Cheshire, UK.

出版信息

J Mol Biol. 1998 Jan 30;275(4):613-23. doi: 10.1006/jmbi.1997.1513.

Abstract

The crystal structure of the molybdenum enzyme dimethylsulphoxide reductase (DMSOR) has been determined at 1.9 A resolution with substrate bound at the active site. DMSOR is an oxotransferase which catalyses the reduction of dimethylsulphoxide (DMSO) to dimethylsulphide (DMS) in a two stage reaction which is linked to oxygen atom transfer and electron transfer. In the first step, DMSO binds to reduced (Mo(IV)) enzyme, the enzyme is oxidised to Mo(VI) with an extra oxygen ligand and DMS is released. Regeneration of reduced enzyme is achieved by transfer of two electrons, successively from a specific cytochrome, and release of the oxygen as water. The enzyme, purified under aerobic conditions, is in the oxidised (Mo(VI)) state. Addition of a large excess of DMS to the oxidised enzyme in solution causes a change in the absorption spectrum of the enzyme. The same reaction occurs within crystals of the enzyme and the crystal structure reveals a complex with DMSO bound to the molybdenum via its oxygen atom. X-ray edge data indicate that the metal is in the Mo(IV) state. The DMSO ligand replaces one of the two oxo groups which ligate the oxidised form of the enzyme, suggesting very strongly that this is the oxygen which is transferred during catalysis. Residues 384 to 390, disordered in the oxidised enzyme, are now clearly seen in the cleft leading to the active site. The side-chain of Trp388 forms a lid trapping the substrate/product.

摘要

已在1.9埃分辨率下测定了钼酶二甲基亚砜还原酶(DMSOR)的晶体结构,其活性位点结合有底物。DMSOR是一种氧转移酶,它在一个与氧原子转移和电子转移相关的两步反应中催化二甲基亚砜(DMSO)还原为二甲基硫醚(DMS)。第一步,DMSO与还原态(Mo(IV))的酶结合,酶被氧化为带有一个额外氧配体的Mo(VI),同时释放出DMS。还原态酶的再生是通过依次从特定细胞色素转移两个电子并将氧以水的形式释放来实现的。在有氧条件下纯化得到的酶处于氧化态(Mo(VI))。向溶液中的氧化态酶加入大量过量的DMS会导致酶的吸收光谱发生变化。该反应在酶的晶体中也会发生,晶体结构揭示了一个DMSO通过其氧原子与钼结合的复合物。X射线边缘数据表明金属处于Mo(IV)态。DMSO配体取代了连接氧化态酶的两个氧基团中的一个,这强烈表明这就是催化过程中转移的氧。在氧化态酶中无序的384至390位残基,现在在通向活性位点的裂隙中清晰可见。Trp388的侧链形成一个盖子困住底物/产物。

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