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功能基因组学:利用转座子探究植物基因功能与表达

Functional genomics: probing plant gene function and expression with transposons.

作者信息

Martienssen R A

机构信息

Cold Spring Harbor Laboratory, Box 100, Cold Spring Harbor, NY 11724, USA.

出版信息

Proc Natl Acad Sci U S A. 1998 Mar 3;95(5):2021-6. doi: 10.1073/pnas.95.5.2021.

DOI:10.1073/pnas.95.5.2021
PMID:9482828
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC33836/
Abstract

Transposable elements provide a convenient and flexible means to disrupt plant genes, so allowing their function to be assessed. By engineering transposons to carry reporter genes and regulatory signals, the expression of target genes can be monitored and to some extent manipulated. Two strategies for using transposons to assess gene function are outlined here: First, the PCR can be used to identify plants that carry insertions into specific genes from among pools of heavily mutagenized individuals (site-selected transposon mutagenesis). This method requires that high copy transposons be used and that a relatively large number of reactions be performed to identify insertions into genes of interest. Second, a large library of plants, each carrying a unique insertion, can be generated. Each insertion site then can be amplified and sequenced systematically. These two methods have been demonstrated in maize, Arabidopsis, and other plant species, and the relative merits of each are discussed in the context of plant genome research.

摘要

转座元件为破坏植物基因提供了一种便捷灵活的手段,从而能够对其功能进行评估。通过对转座子进行工程改造,使其携带报告基因和调控信号,可以监测并在一定程度上操纵靶基因的表达。本文概述了利用转座子评估基因功能的两种策略:第一,聚合酶链式反应(PCR)可用于从大量诱变个体群体中鉴定出携带特定基因插入的植物(位点选择转座子诱变)。该方法要求使用高拷贝转座子,并且需要进行相对大量的反应以鉴定感兴趣基因中的插入情况。第二,可以构建一个大型植物文库,每个植物携带一个独特的插入片段。然后可以系统地扩增并测序每个插入位点。这两种方法已在玉米、拟南芥和其他植物物种中得到验证,并且在植物基因组研究的背景下讨论了每种方法的相对优点。

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本文引用的文献

1
The origin and behavior of mutable loci in maize.玉米中可变异位点的起源与行为。
Proc Natl Acad Sci U S A. 1950 Jun;36(6):344-55. doi: 10.1073/pnas.36.6.344.
2
Sec-independent protein translocation by the maize Hcf106 protein.玉米Hcf106蛋白介导的不依赖Sec的蛋白质转运
Science. 1997 Nov 21;278(5342):1467-70. doi: 10.1126/science.278.5342.1467.
3
Targeted disruption in Arabidopsis.拟南芥中的靶向破坏。
Nature. 1997 Oct 23;389(6653):802-3. doi: 10.1038/39770.
4
Gene trapping and functional genomics.基因捕获与功能基因组学
Trends Genet. 1997 Sep;13(9):370-4. doi: 10.1016/s0168-9525(97)01240-7.
5
Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes.玉米、水稻和高粱基因组中sh2同源区域的微共线性
Proc Natl Acad Sci U S A. 1997 Apr 1;94(7):3431-5. doi: 10.1073/pnas.94.7.3431.
6
Gene identification in a complex chromosomal continuum by local genomic cross-referencing.通过局部基因组交叉比对在复杂染色体连续体中进行基因鉴定。
Plant J. 1996 Dec;10(6):1163-8. doi: 10.1046/j.1365-313x.1996.10061163.x.
7
RNA as a target and an initiator of post-transcriptional gene silencing in transgenic plants.RNA作为转基因植物转录后基因沉默的靶点和引发剂。
Plant Mol Biol. 1996 Oct;32(1-2):79-88. doi: 10.1007/BF00039378.
8
Nested retrotransposons in the intergenic regions of the maize genome.玉米基因组基因间区域中的嵌套反转录转座子。
Science. 1996 Nov 1;274(5288):765-8. doi: 10.1126/science.274.5288.765.
9
A transposon insertion in the Arabidopsis SSR16 gene causes an embryo-defective lethal mutation.拟南芥SSR16基因中的转座子插入导致胚胎缺陷致死突变。
Plant J. 1996 Sep;10(3):479-89. doi: 10.1046/j.1365-313x.1996.10030479.x.
10
Meiotic recombination break points resolve at high rates at the 5' end of a maize coding sequence.减数分裂重组断点在玉米编码序列5'端以高频率解析。
Plant Cell. 1995 Dec;7(12):2151-61. doi: 10.1105/tpc.7.12.2151.