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SR蛋白足以跨越内含子进行外显子桥接。

SR proteins are sufficient for exon bridging across an intron.

作者信息

Stark J M, Bazett-Jones D P, Herfort M, Roth M B

机构信息

Division of Basic Sciences and Molecular and Cellular Biology Program, Fred Hutchinson Cancer Research Center, Seattle, WA 98104, USA.

出版信息

Proc Natl Acad Sci U S A. 1998 Mar 3;95(5):2163-8. doi: 10.1073/pnas.95.5.2163.

DOI:10.1073/pnas.95.5.2163
PMID:9482856
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC19283/
Abstract

We have developed a defined system to characterize the role of SR proteins and exonic enhancers in directly promoting splice-site interactions across an intron. Using RNA affinity chromatography, we find that SR proteins alone are sufficient to promote the specific association of the enhancer-containing exon 5 with the adjoining exon 6 from avian cardiac troponin-T. Direct visualization of this exon/exon association by electron spectroscopic imaging shows it to be highly specific. Furthermore, using in vivo characterized mutants of exon 5, we also show that this exon/exon association depends on the splicing enhancer within exon 5. These results suggest a model by which SR proteins may function through exonic enhancers to directly promote exon bridging.

摘要

我们已经开发出一种特定系统,用于表征SR蛋白和外显子增强子在直接促进内含子上剪接位点相互作用中的作用。通过RNA亲和色谱法,我们发现单独的SR蛋白足以促进含增强子的外显子5与来自禽心肌肌钙蛋白T的相邻外显子6的特异性结合。通过电子光谱成像对这种外显子/外显子结合进行直接观察,结果表明其具有高度特异性。此外,利用体内表征的外显子5突变体,我们还表明这种外显子/外显子结合依赖于外显子5内的剪接增强子。这些结果提示了一种模型,即SR蛋白可能通过外显子增强子发挥作用,直接促进外显子桥接。

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1
SR proteins are sufficient for exon bridging across an intron.SR蛋白足以跨越内含子进行外显子桥接。
Proc Natl Acad Sci U S A. 1998 Mar 3;95(5):2163-8. doi: 10.1073/pnas.95.5.2163.
2
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3
Specific binding of an exonic splicing enhancer by the pre-mRNA splicing factor SRp55.前体mRNA剪接因子SRp55与外显子剪接增强子的特异性结合。
RNA. 1998 Jan;4(1):11-23.
4
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The CD44 alternative v9 exon contains a splicing enhancer responsive to the SR proteins 9G8, ASF/SF2, and SRp20.CD44可变v9外显子包含一个对SR蛋白9G8、ASF/SF2和SRp20有反应的剪接增强子。
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Nucleic Acids Res. 1999 Jun 1;27(11):2377-86. doi: 10.1093/nar/27.11.2377.

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本文引用的文献

1
Interaction of U2AF65 RS region with pre-mRNA branch point and promotion of base pairing with U2 snRNA [corrected].U2AF65 RS区域与前体mRNA分支点的相互作用以及与U2小核RNA碱基配对的促进作用[已修正]
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The splicing factor U2AF35 mediates critical protein-protein interactions in constitutive and enhancer-dependent splicing.剪接因子U2AF35在组成型剪接和增强子依赖性剪接中介导关键的蛋白质-蛋白质相互作用。
Genes Dev. 1996 Jun 1;10(11):1356-68. doi: 10.1101/gad.10.11.1356.
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Disruption of U8 nucleolar snRNA inhibits 5.8S and 28S rRNA processing in the Xenopus oocyte.U8核仁小核仁核糖核酸的破坏会抑制非洲爪蟾卵母细胞中5.8S和28S核糖体核糖核酸的加工。
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The cardiac troponin T alternative exon contains a novel purine-rich positive splicing element.心肌肌钙蛋白T可变外显子包含一个新的富含嘌呤的正性剪接元件。
Mol Cell Biol. 1993 Jun;13(6):3660-74. doi: 10.1128/mcb.13.6.3660-3674.1993.
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Distinct functions of SR proteins in alternative pre-mRNA splicing.SR蛋白在可变前体mRNA剪接中的不同功能。
Science. 1993 Apr 9;260(5105):219-22. doi: 10.1126/science.8385799.
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Specific commitment of different pre-mRNAs to splicing by single SR proteins.不同前体mRNA由单个SR蛋白进行剪接的特异性调控
Nature. 1993 Sep 2;365(6441):82-5. doi: 10.1038/365082a0.
9
A base-pairing interaction between U2 and U6 small nuclear RNAs occurs in > 150S complexes in HeLa cell extracts: implications for the spliceosome assembly pathway.在HeLa细胞提取物的>150S复合物中,U2和U6小核RNA之间发生碱基配对相互作用:对剪接体组装途径的影响。
Proc Natl Acad Sci U S A. 1993 Aug 1;90(15):7139-43. doi: 10.1073/pnas.90.15.7139.
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A splicing enhancer complex controls alternative splicing of doublesex pre-mRNA.一种剪接增强子复合物控制双性基因前体mRNA的可变剪接。
Cell. 1993 Jul 16;74(1):105-14. doi: 10.1016/0092-8674(93)90298-5.