• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

用于多样性选择的结构描述符和聚类方法的评估。

An evaluation of structural descriptors and clustering methods for use in diversity selection.

作者信息

Brown R D, Martin Y C

机构信息

Pharmaceutical Products Division, Abbott Laboratories, Abbott Park, IL 60064-350, USA.

出版信息

SAR QSAR Environ Res. 1998;8(1-2):23-39. doi: 10.1080/10629369808033260.

DOI:10.1080/10629369808033260
PMID:9517009
Abstract

An evaluation of the suitability of a number of structural descriptors and clustering methods for use in diversity selection is presented. The methods are compared by their success in simulated biological activity predictions. The results suggest that simple 2D structural descriptors are particularly effective and that hierarchical clustering methods are superior to the non-hierarchical methods traditionally used for diversity related tasks. Results are presented which suggest that the difference in the utility of the descriptors can be accounted for by the different extent to which each encodes information relevant to the forces of ligand-receptor binding.

摘要

本文对多种用于多样性选择的结构描述符和聚类方法的适用性进行了评估。通过它们在模拟生物活性预测中的成功程度对这些方法进行了比较。结果表明,简单的二维结构描述符特别有效,并且层次聚类方法优于传统上用于与多样性相关任务的非层次方法。所呈现的结果表明,描述符效用的差异可以通过每个描述符编码与配体-受体结合力相关信息的不同程度来解释。

相似文献

1
An evaluation of structural descriptors and clustering methods for use in diversity selection.用于多样性选择的结构描述符和聚类方法的评估。
SAR QSAR Environ Res. 1998;8(1-2):23-39. doi: 10.1080/10629369808033260.
2
Selecting optimally diverse compounds from structure databases: a validation study of two-dimensional and three-dimensional molecular descriptors.从结构数据库中选择最优多样化的化合物:二维和三维分子描述符的验证研究
J Med Chem. 1997 Apr 11;40(8):1219-29. doi: 10.1021/jm960352+.
3
Can descriptors of the electron density distribution help to distinguish functional groups?
J Chem Inf Model. 2008 Oct;48(10):1974-83. doi: 10.1021/ci800148z. Epub 2008 Oct 3.
4
How diverse are diversity assessment methods? A comparative analysis and benchmarking of molecular descriptor space.多样性评估方法有哪些差异?分子描述符空间的比较分析和基准测试。
J Chem Inf Model. 2014 Jan 27;54(1):230-42. doi: 10.1021/ci400469u. Epub 2013 Dec 13.
5
A structure-odour relationship study using EVA descriptors and hierarchical clustering.一项使用EVA描述符和层次聚类的结构-气味关系研究。
Org Biomol Chem. 2004 Nov 21;2(22):3250-5. doi: 10.1039/B409802A. Epub 2004 Sep 28.
6
Comparison of combinatorial clustering methods on pharmacological data sets represented by machine learning-selected real molecular descriptors.基于机器学习筛选的真实分子描述符的药理学数据集的组合聚类方法比较。
J Chem Inf Model. 2011 Dec 27;51(12):3036-49. doi: 10.1021/ci2000083. Epub 2011 Dec 9.
7
[The computerized prediction of the spectrum of biological activity of chemical compounds by their structural formula: the PASS system. Prediction of Activity Spectra for Substance].
Eksp Klin Farmakol. 1995 Mar-Apr;58(2):56-62.
8
Development of a spectral clustering method for the analysis of molecular data sets.用于分子数据集分析的谱聚类方法的开发。
J Chem Inf Model. 2007 Sep-Oct;47(5):1727-33. doi: 10.1021/ci600565r. Epub 2007 Jul 18.
9
Enhancing the diversity of a corporate database using chemical database clustering and analysis.利用化学数据库聚类和分析提高企业数据库的多样性。
J Comput Aided Mol Des. 1995 Oct;9(5):407-16. doi: 10.1007/BF00123998.
10
HCPM--program for hierarchical clustering of protein models.HCPM——蛋白质模型层次聚类程序。
Bioinformatics. 2005 Jul 15;21(14):3179-80. doi: 10.1093/bioinformatics/bti450. Epub 2005 Apr 19.

引用本文的文献

1
Retrosynthetic reaction pathway prediction through neural machine translation of atomic environments.通过原子环境的神经机器翻译预测反合成反应途径。
Nat Commun. 2022 Mar 4;13(1):1186. doi: 10.1038/s41467-022-28857-w.
2
Inhibitors of SARS-3CLpro: virtual screening, biological evaluation, and molecular dynamics simulation studies.SARS-3CLpro 抑制剂:虚拟筛选、生物评价和分子动力学模拟研究。
J Chem Inf Model. 2011 Jun 27;51(6):1376-92. doi: 10.1021/ci1004916. Epub 2011 May 23.
3
Identification and validation of human DNA ligase inhibitors using computer-aided drug design.
利用计算机辅助药物设计鉴定和验证人类DNA连接酶抑制剂
J Med Chem. 2008 Aug 14;51(15):4553-62. doi: 10.1021/jm8001668. Epub 2008 Jul 17.
4
Antitumor agents 252. Application of validated QSAR models to database mining: discovery of novel tylophorine derivatives as potential anticancer agents.抗肿瘤药物252. 经验证的定量构效关系模型在数据库挖掘中的应用:发现新型娃儿藤碱衍生物作为潜在抗癌药物。
J Comput Aided Mol Des. 2007 Jan-Mar;21(1-3):97-112. doi: 10.1007/s10822-007-9102-6. Epub 2007 Mar 6.