Maurus R, Bogumil R, Nguyen N T, Mauk A G, Brayer G
Department of Biochemistry and Molecular Biology and the Protein Engineering Network of Centres of Excellence, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada.
Biochem J. 1998 May 15;332 ( Pt 1)(Pt 1):67-74. doi: 10.1042/bj3320067.
The high-resolution X-ray crystallographic structures of horse heart azidometmyoglobin complexes of the wild-type protein and the His-64-->Thr variant have been determined to 2.0 and 1.8 A respectively. Azide binds to wild-type metmyoglobin in a bent configuration with an Fe-N-1-N-3 angle of 119 degrees and is oriented into the distal crevice in the direction of Ile-107. The proximity of the His-64 NE2 atom to the N-1 atom of the bound azide indicates stabilization of the ligand by the His-64 side chain through hydrogen bonding. In addition, structural characterization of wild-type horse heart azidometmyoglobin establishes that the only structural change induced by ligand binding is a small movement of the Leu-29 side chain away from the azide ligand. EPR and Fourier transform infrared spectroscopy were used to characterize the myoglobin azide complexes further. EPR spectroscopy revealed that, in contrast with wild-type azidometmyoglobin, two slightly different low-spin species are formed by azide bound to the His-64-->Thr variant both in solution and in a polycrystalline sample. One of these low-spin species has a greater relative intensity, with g values very similar to those of the azide complex of the wild-type protein. These EPR results together with structural information on this variant indicate the presence of two distinct conformations of bound azide, with one form predominating. The major conformation is comparable to that formed by wild-type myoglobin in which azide is oriented into the distal crevice. In the minor conformation the azide is oriented towards the exterior of the protein.
已分别测定野生型蛋白和His-64→Thr变体的马心叠氮高铁肌红蛋白复合物的高分辨率X射线晶体结构,分辨率分别为2.0 Å和1.8 Å。叠氮化物以弯曲构型与野生型高铁肌红蛋白结合,Fe-N-1-N-3角度为119度,并沿Ile-107方向进入远端裂隙。His-64的NE2原子与结合的叠氮化物的N-1原子接近,表明His-64侧链通过氢键作用使配体稳定。此外,野生型马心叠氮高铁肌红蛋白的结构表征表明,配体结合诱导的唯一结构变化是Leu-29侧链远离叠氮化物配体的微小移动。采用电子顺磁共振(EPR)和傅里叶变换红外光谱对肌红蛋白叠氮复合物进行了进一步表征。EPR光谱显示,与野生型叠氮高铁肌红蛋白不同,叠氮化物与His-64→Thr变体结合在溶液和多晶样品中均形成两种略有不同的低自旋物种。其中一种低自旋物种具有较高的相对强度,其g值与野生型蛋白的叠氮复合物非常相似。这些EPR结果与该变体的结构信息一起表明存在两种不同的结合叠氮化物构象,其中一种构象占主导。主要构象与野生型肌红蛋白形成的构象相当,其中叠氮化物定向进入远端裂隙。在次要构象中,叠氮化物朝向蛋白质外部。