• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

构象动力学与酶活性。

Conformational dynamics and enzyme activity.

作者信息

Yon J M, Perahia D, Ghélis C

机构信息

Laboratoire de Modélisation et d'Ingénérie des Protéines, Unité Associée du CNRS, Université de Paris-Sud, Orsay, France.

出版信息

Biochimie. 1998 Jan;80(1):33-42. doi: 10.1016/s0300-9084(98)80054-0.

DOI:10.1016/s0300-9084(98)80054-0
PMID:9587660
Abstract

Conformational flexibility and structural fluctuations play an important role in enzyme activity. A great variety of internal motions ranging over different time scales and of different amplitudes are involved in the catalytic cycle. These different types of motions and their functional consequences are considered in the light of experimental data and theoretical analyses. The conformational changes upon substrate binding, and particularly the hinge-bending motion which occurs in enzymes made of two domains, are analyzed from several well documented examples. The conformational events accompanying the different steps of the catalytic cycle are discussed. The last section concerns the motions involved in the allosteric transition which regulates the enzyme activity.

摘要

构象灵活性和结构波动在酶活性中起着重要作用。催化循环涉及各种不同时间尺度和不同幅度的内部运动。根据实验数据和理论分析,考虑了这些不同类型的运动及其功能后果。从几个有充分文献记载的例子中分析了底物结合时的构象变化,特别是在由两个结构域组成的酶中发生的铰链弯曲运动。讨论了催化循环不同步骤伴随的构象事件。最后一部分涉及调节酶活性的变构转变中涉及的运动。

相似文献

1
Conformational dynamics and enzyme activity.构象动力学与酶活性。
Biochimie. 1998 Jan;80(1):33-42. doi: 10.1016/s0300-9084(98)80054-0.
2
Folding funnels and conformational transitions via hinge-bending motions.通过铰链弯曲运动的折叠漏斗与构象转变。
Cell Biochem Biophys. 1999;31(2):141-64. doi: 10.1007/BF02738169.
3
Allostery in enzyme catalysis.变构在酶催化中的作用。
Curr Opin Struct Biol. 2017 Dec;47:123-130. doi: 10.1016/j.sbi.2017.08.002. Epub 2017 Sep 1.
4
Multiple conformational changes in enzyme catalysis.酶催化中的多种构象变化。
Biochemistry. 2002 Jul 2;41(26):8221-8. doi: 10.1021/bi0260839.
5
Role of dynamics in enzyme catalysis: substantial versus semantic controversies.动力学在酶催化中的作用:实质争议与语义争议
Acc Chem Res. 2015 Feb 17;48(2):466-73. doi: 10.1021/ar500322s. Epub 2014 Dec 24.
6
Coupling between catalytic site and collective dynamics: a requirement for mechanochemical activity of enzymes.催化位点与集体动力学之间的耦合:酶机械化学活性的必要条件。
Structure. 2005 Jun;13(6):893-904. doi: 10.1016/j.str.2005.03.015.
7
Domain motions and the open-to-closed conformational transition of an enzyme: a normal mode analysis of S-adenosyl-L-homocysteine hydrolase.酶的结构域运动与开放到闭合的构象转变:S-腺苷-L-高半胱氨酸水解酶的正常模式分析
Biochemistry. 2005 May 17;44(19):7228-39. doi: 10.1021/bi047524m.
8
Engineered control of enzyme structural dynamics and function.酶结构动力学和功能的工程控制。
Protein Sci. 2018 Apr;27(4):825-838. doi: 10.1002/pro.3379. Epub 2018 Feb 16.
9
Using NMR spectroscopy to elucidate the role of molecular motions in enzyme function.利用核磁共振光谱阐明分子运动在酶功能中的作用。
Prog Nucl Magn Reson Spectrosc. 2016 Feb;92-93:1-17. doi: 10.1016/j.pnmrs.2015.11.001. Epub 2015 Dec 7.
10
The role of dynamics in enzyme activity.动力学在酶活性中的作用。
Annu Rev Biophys Biomol Struct. 2003;32:69-92. doi: 10.1146/annurev.biophys.32.110601.142445. Epub 2002 Dec 2.

引用本文的文献

1
A new view of missense mutations in α-mannosidosis using molecular dynamics conformational ensembles.利用分子动力学构象系综对α-甘露糖苷贮积症中错义突变的新见解。
Protein Sci. 2025 Apr;34(4):e70080. doi: 10.1002/pro.70080.
2
Ratcheting synthesis.棘轮合成
Nat Rev Chem. 2024 Jan;8(1):8-29. doi: 10.1038/s41570-023-00558-y. Epub 2023 Dec 15.
3
From random to rational: improving enzyme design through electric fields, second coordination sphere interactions, and conformational dynamics.从随机到理性:通过电场、二级配位层相互作用和构象动力学改进酶设计。
Chem Sci. 2023 Sep 13;14(40):10997-11011. doi: 10.1039/d3sc02982d. eCollection 2023 Oct 18.
4
..
BBA Adv. 2022 Jan 12;2:100041. doi: 10.1016/j.bbadva.2022.100041. eCollection 2022.
5
Sampling of Protein Conformational Space Using Hybrid Simulations: A Critical Assessment of Recent Methods.使用混合模拟对蛋白质构象空间进行采样:对近期方法的批判性评估。
Front Mol Biosci. 2022 Feb 4;9:832847. doi: 10.3389/fmolb.2022.832847. eCollection 2022.
6
β-Lactamase of Mycobacterium tuberculosis Shows Dynamics in the Active Site That Increase upon Inhibitor Binding.结核分枝杆菌β-内酰胺酶在活性位点的动力学在结合抑制剂后增加。
Antimicrob Agents Chemother. 2020 Feb 21;64(3). doi: 10.1128/AAC.02025-19.
7
Protein dynamic communities from elastic network models align closely to the communities defined by molecular dynamics.从弹性网络模型得出的蛋白质动态社区与通过分子动力学定义的社区非常吻合。
PLoS One. 2018 Jun 20;13(6):e0199225. doi: 10.1371/journal.pone.0199225. eCollection 2018.
8
As-Rigid-As-Possible molecular interpolation paths.尽可能刚性的分子插值路径。
J Comput Aided Mol Des. 2017 Apr;31(4):403-417. doi: 10.1007/s10822-017-0012-y. Epub 2017 Mar 20.
9
Structural characterization of zinc-bound Zmp1, a zinc-dependent metalloprotease secreted by Clostridium difficile.艰难梭菌分泌的锌依赖性金属蛋白酶Zmp1与锌结合的结构表征
J Biol Inorg Chem. 2016 Apr;21(2):185-96. doi: 10.1007/s00775-015-1319-6. Epub 2015 Dec 28.
10
Pulsed EPR characterization of HIV-1 protease conformational sampling and inhibitor-induced population shifts.HIV-1蛋白酶构象采样及抑制剂诱导的种群转移的脉冲电子顺磁共振表征
Phys Chem Chem Phys. 2016 Feb 17;18(8):5819-31. doi: 10.1039/c5cp04556h.