• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

抗体分子剖析:抗溶菌酶抗体D1.3的结构、动力学、热力学及突变研究

Anatomy of an antibody molecule: structure, kinetics, thermodynamics and mutational studies of the antilysozyme antibody D1.3.

作者信息

Braden B C, Goldman E R, Mariuzza R A, Poljak R J

机构信息

Center for Advanced Research in Biotechnology, University of Maryland Biotechnology Institute, Rockville, USA.

出版信息

Immunol Rev. 1998 Jun;163:45-57. doi: 10.1111/j.1600-065x.1998.tb01187.x.

DOI:10.1111/j.1600-065x.1998.tb01187.x
PMID:9700501
Abstract

Using site-directed mutagenesis, x-ray crystallography, microcalorimetric, equilibrium sedimentation and surface plasmon resonance detection techniques, we have examined the structure of an antibody-antigen complex and the structural and thermodynamic consequences of removing specific hydrogen bonds and van der Waals interactions in the antibody-antigen interface. These observations show that the complex is considerably tolerant, both structurally and thermodynamically, to the truncation of antibody and antigen side chains that form contacts. Alterations in interface solvent structure for two of the mutant complexes appear to compensate for the unfavorable enthalpy changes when antibody-antigen interactions are removed. These changes in solvent structure, along with the increased mobility of side chains near the mutation site, probably contribute to the observed entropy compensation. In concert, data from structural studies, reaction rates, calorimetric measurements and site directed mutations are beginning to detail the nature of antibody-protein antigen interactions.

摘要

利用定点诱变、X射线晶体学、微量量热法、平衡沉降和表面等离子体共振检测技术,我们研究了抗体-抗原复合物的结构,以及去除抗体-抗原界面中特定氢键和范德华相互作用的结构和热力学后果。这些观察结果表明,该复合物在结构和热力学上对形成接触的抗体和抗原侧链的截断具有相当的耐受性。当去除抗体-抗原相互作用时,两种突变复合物的界面溶剂结构变化似乎补偿了不利的焓变。溶剂结构的这些变化,以及突变位点附近侧链流动性的增加,可能导致了观察到的熵补偿。综合来看,来自结构研究、反应速率、量热测量和定点突变的数据开始详细阐述抗体-蛋白质抗原相互作用的本质。

相似文献

1
Anatomy of an antibody molecule: structure, kinetics, thermodynamics and mutational studies of the antilysozyme antibody D1.3.抗体分子剖析:抗溶菌酶抗体D1.3的结构、动力学、热力学及突变研究
Immunol Rev. 1998 Jun;163:45-57. doi: 10.1111/j.1600-065x.1998.tb01187.x.
2
Hydrogen bonding and solvent structure in an antigen-antibody interface. Crystal structures and thermodynamic characterization of three Fv mutants complexed with lysozyme.抗原-抗体界面中的氢键和溶剂结构。与溶菌酶复合的三种Fv突变体的晶体结构和热力学特征。
Biochemistry. 1996 Dec 3;35(48):15494-503. doi: 10.1021/bi961709e.
3
A mutational analysis of binding interactions in an antigen-antibody protein-protein complex.抗原-抗体蛋白质-蛋白质复合物中结合相互作用的突变分析。
Biochemistry. 1998 Jun 2;37(22):7981-91. doi: 10.1021/bi980148j.
4
Contribution of asparagine residues to the stabilization of a proteinaceous antigen-antibody complex, HyHEL-10-hen egg white lysozyme.天冬酰胺残基对蛋白质抗原-抗体复合物(HyHEL-10-鸡卵清溶菌酶)稳定性的贡献。
J Biol Chem. 2010 Mar 5;285(10):7686-96. doi: 10.1074/jbc.M109.089623. Epub 2009 Dec 28.
5
Crystal structure of the complex of the variable domain of antibody D1.3 and turkey egg white lysozyme: a novel conformational change in antibody CDR-L3 selects for antigen.抗体D1.3可变结构域与火鸡卵清溶菌酶复合物的晶体结构:抗体互补决定区L3中一种新型构象变化对抗原的选择作用
J Mol Biol. 1996 Apr 19;257(5):889-94. doi: 10.1006/jmbi.1996.0209.
6
Solvent rearrangement in an antigen-antibody interface introduced by site-directed mutagenesis of the antibody combining site.通过抗体结合位点的定点诱变在抗原-抗体界面引入的溶剂重排。
J Mol Biol. 1994 May 13;238(4):496-500. doi: 10.1006/jmbi.1994.1309.
7
Three-dimensional structures of the free and antigen-bound Fab from monoclonal antilysozyme antibody HyHEL-63(,).来自单克隆抗溶菌酶抗体HyHEL-63的游离Fab片段和抗原结合Fab片段的三维结构(,)。
Biochemistry. 2000 May 30;39(21):6296-309. doi: 10.1021/bi000054l.
8
Bound water molecules and conformational stabilization help mediate an antigen-antibody association.结合水分子与构象稳定作用有助于介导抗原-抗体结合。
Proc Natl Acad Sci U S A. 1994 Feb 1;91(3):1089-93. doi: 10.1073/pnas.91.3.1089.
9
Dissection of binding interactions in the complex between the anti-lysozyme antibody HyHEL-63 and its antigen.抗溶菌酶抗体HyHEL-63与其抗原复合物中结合相互作用的剖析
Biochemistry. 2003 Jan 14;42(1):11-22. doi: 10.1021/bi020589+.
10
A mutational analysis of the binding of two different proteins to the same antibody.两种不同蛋白质与同一种抗体结合的突变分析。
Biochemistry. 1996 Jul 30;35(30):9667-76. doi: 10.1021/bi960819i.

引用本文的文献

1
Hierarchical sequence-affinity landscapes shape the evolution of breadth in an anti-influenza receptor binding site antibody.层次序列亲和景观塑造了抗流感受体结合位点抗体的广谱性进化。
Elife. 2023 Jan 10;12:e83628. doi: 10.7554/eLife.83628.
2
Binding affinity landscapes constrain the evolution of broadly neutralizing anti-influenza antibodies.结合亲和力景观限制了广谱中和抗流感抗体的进化。
Elife. 2021 Sep 7;10:e71393. doi: 10.7554/eLife.71393.
3
Elucidation of potential sites for antibody engineering by fluctuation editing.通过波动编辑阐明抗体工程的潜在位点。
Sci Rep. 2017 Aug 30;7(1):9597. doi: 10.1038/s41598-017-10246-9.
4
A Rough Energy Landscape to Describe Surface-Linked Antibody and Antigen Bond Formation.用于描述表面连接的抗体与抗原键形成的粗糙能量景观。
Sci Rep. 2016 Oct 12;6:35193. doi: 10.1038/srep35193.
5
The potential of liposomes with carbonic anhydrase IX to deliver anticancer ingredients to cancer cells in vivo.碳酸酐酶IX脂质体在体内向癌细胞递送抗癌成分的潜力。
Int J Mol Sci. 2014 Dec 24;16(1):230-55. doi: 10.3390/ijms16010230.
6
Reconstructing a B-cell clonal lineage. I. Statistical inference of unobserved ancestors.重建B细胞克隆谱系。I. 未观察到的祖先的统计推断。
F1000Res. 2013 Apr 3;2:103. doi: 10.12688/f1000research.2-103.v1. eCollection 2013.
7
High-resolution, high-throughput, positive-tone patterning of poly(ethylene glycol) by helium beam exposure through stencil masks.氦束曝光通过掩模版对聚乙二醇进行高分辨率、高通量、正性图案化。
PLoS One. 2013 May 24;8(5):e56835. doi: 10.1371/journal.pone.0056835. Print 2013.
8
Preconfiguration of the antigen-binding site during affinity maturation of a broadly neutralizing influenza virus antibody.在广谱中和流感病毒抗体亲和力成熟过程中抗原结合位点的预构象。
Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):264-9. doi: 10.1073/pnas.1218256109. Epub 2012 Nov 21.
9
The peptide-receptive transition state of MHC class I molecules: insight from structure and molecular dynamics.MHC Ⅰ类分子的肽受体过渡态:结构和分子动力学的见解。
J Immunol. 2012 Aug 1;189(3):1391-9. doi: 10.4049/jimmunol.1200831. Epub 2012 Jun 29.
10
Antibodies raised against chlamydial lipopolysaccharide antigens reveal convergence in germline gene usage and differential epitope recognition.针对衣原体脂多糖抗原产生的抗体揭示了在胚系基因使用和不同表位识别方面的趋同。
Biochemistry. 2010 Jan 26;49(3):570-81. doi: 10.1021/bi9011308.