Segall M D, Payne M C, Ellis W, Tucker G T, Boyes N
Cavendish Laboratory (TCM), University of Cambridge, Cambridge CB3 0HE, U.K.
Chem Res Toxicol. 1998 Aug;11(8):962-6. doi: 10.1021/tx980017j.
The cytochrome P450 superfamily of enzymes is ubiquitous, being responsible for the metabolism of a wide range of endogenous and xenobiotic compounds. However, the detailed mechanism of the catalytic cycle of these enzymes is still not fully understood. We describe results, obtained from first principles molecular simulations, which indicate that the low-spin state of the Fe3+ ion, present in the heme moiety at the active site of a cytochrome P450 enzyme, may be stabilized by shortening of the proximal bond of the heme. Calculations indicate that a bond length of less than approximately 2.05 A between the heme Fe3+ ion and the cysteine S, which forms the proximal ligand, would result in the stabilization of the low-spin state of the Fe3+, inhibiting the progress of the P450 catalytic cycle. Our investigation uses novel first principles modeling techniques which treat the entire system quantum-mechanically.
细胞色素P450酶超家族广泛存在,负责多种内源性和外源性化合物的代谢。然而,这些酶催化循环的详细机制仍未完全明确。我们描述了从第一性原理分子模拟中获得的结果,这些结果表明,细胞色素P450酶活性位点血红素部分存在的Fe3+离子的低自旋态,可能通过缩短血红素的近端键而得以稳定。计算表明,血红素Fe3+离子与形成近端配体的半胱氨酸S之间的键长小于约2.05 Å,将导致Fe3+低自旋态的稳定,从而抑制P450催化循环的进程。我们的研究采用了全新的第一性原理建模技术,该技术对整个系统进行量子力学处理。