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莫拉克斯氏菌属B种氟乙酸脱卤酶的反应机制

Reaction mechanism of fluoroacetate dehalogenase from Moraxella sp. B.

作者信息

Liu J Q, Kurihara T, Ichiyama S, Miyagi M, Tsunasawa S, Kawasaki H, Soda K, Esaki N

机构信息

Laboratory of Microbial Biochemistry, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan.

出版信息

J Biol Chem. 1998 Nov 20;273(47):30897-902. doi: 10.1074/jbc.273.47.30897.

Abstract

Fluoroacetate dehalogenase (EC 3.8.1.3) catalyzes the dehalogenation of fluoroacetate and other haloacetates. The amino acid sequence of fluoroacetate dehalogenase from Moraxella sp. B is similar to that of haloalkane dehalogenase (EC 3.8.1.5) from Xanthobacter autotrophicus GJ10 in the regions around Asp-105 and His-272, which correspond to the active site nucleophile Asp-124 and the base catalyst His-289 of the haloalkane dehalogenase, respectively (Krooshof, G. H., Kwant, E. M., Damborský, J., Koca, J., and Janssen, D. B. (1997) Biochemistry 36, 9571-9580). After multiple turnovers of the fluoroacetate dehalogenase reaction in H218O, the enzyme was digested with trypsin, and the molecular masses of the peptide fragments formed were measured by ion-spray mass spectrometry. Two 18O atoms were shown to be incorporated into the octapeptide, Phe-99-Arg-106. Tandem mass spectrometric analysis of this peptide revealed that Asp-105 was labeled with two 18O atoms. These results indicate that Asp-105 acts as a nucleophile to attack the alpha-carbon of the substrate, leading to the formation of an ester intermediate, which is subsequently hydrolyzed by the nucleophilic attack of a water molecule on the carbonyl carbon atom. A His-272 --> Asn mutant (H272N) showed no activity with either fluoroacetate or chloroacetate. However, ion-spray mass spectrometry revealed that the H272N mutant enzyme was covalently alkylated with the substrate. The reaction of the H272N mutant enzyme with [14C]chloroacetate also showed the incorporation of radioactivity into the enzyme. These results suggest that His-272 probably acts as a base catalyst for the hydrolysis of the covalent ester intermediate.

摘要

氟乙酸脱卤酶(EC 3.8.1.3)催化氟乙酸和其他卤代乙酸的脱卤反应。来自莫拉克斯氏菌属B的氟乙酸脱卤酶的氨基酸序列在Asp-105和His-272周围区域与自养黄色杆菌GJ10的卤代烷脱卤酶(EC 3.8.1.5)相似,这两个区域分别对应卤代烷脱卤酶的活性位点亲核试剂Asp-124和碱催化剂His-289(Krooshof, G. H., Kwant, E. M., Damborský, J., Koca, J., and Janssen, D. B. (1997) Biochemistry 36, 9571-9580)。在H₂¹⁸O中进行氟乙酸脱卤酶反应的多次周转后,用胰蛋白酶消化该酶,通过离子喷雾质谱法测量形成的肽片段的分子量。结果表明有两个¹⁸O原子掺入八肽Phe-99-Arg-106中。对该肽的串联质谱分析表明Asp-105被两个¹⁸O原子标记。这些结果表明Asp-105作为亲核试剂攻击底物的α-碳,导致形成酯中间体,随后该酯中间体通过水分子对羰基碳原子的亲核攻击而水解。His-272→Asn突变体(H272N)对氟乙酸或氯乙酸均无活性。然而,离子喷雾质谱显示H272N突变体酶与底物发生了共价烷基化。H272N突变体酶与[¹⁴C]氯乙酸的反应也显示有放射性掺入该酶中。这些结果表明His-272可能作为共价酯中间体水解的碱催化剂。

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