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模拟同聚物自我复制:对早期竞争的影响

Modeling homopolymer self-replication: implications for early competition.

作者信息

Monteiro L H, Piqueira J R

机构信息

Laboratório de Automação e Controle, Departamento de Engenharia Eletrônica, Escola Politécnica, Universidade de São Paulo, CR 61548, CEP 05424-970 São Paulo, S. P., Brazil.

出版信息

J Theor Biol. 1999 Jan 7;196(1):51-60. doi: 10.1006/jtbi.1998.0823.

Abstract

We start showing that the rate equation for a homopolymer self-replication may be written as being proportional to mbetapGamma with beta=1 and Gamma=1/2, where m is the monomer concentration and p is the homopolymer total concentration (double helices plus isolated strands). With such values for the exponents beta and Gamma, we examine analytically the asymptotic behavior of our model previously proposed for studying the early polymer evolution. In this model, polymers compete for activated monomers carried into the system under a constant flux. Time changes on their concentrations are determined by the reactions of: spontaneous generation of dimers through non-instructed junction of two monomers; ligation among free monomers and polymers at the end of their chains, so that they can extend their sizes; template-instructed synthesis by which polymers with lengths above a length threshold can catalyse the formation of other polymers; and decomposition of all species. We find out that if the monomer flux intensity is "low" (lesser than the decomposition rate constants), dimer is the dominant species. Under a "high" flux (greater than the template-instructed synthesis rate constant), the longest self-replicating species prevails. For a "middle" flux (between "low" and "high"), the shortest self-replicating polymer is the winner. Whatever the flux intensity, all polymer species ever coexist.

摘要

我们首先表明,均聚物自我复制的速率方程可以写成与(m\beta^{\Gamma})成正比,其中(\beta = 1)且(\Gamma = 1/2),这里(m)是单体浓度,(p)是均聚物的总浓度(双螺旋加上单链)。利用(\beta)和(\Gamma)的这些指数值,我们分析性地研究了我们之前提出的用于研究早期聚合物进化的模型的渐近行为。在这个模型中,聚合物竞争在恒定通量下进入系统的活化单体。它们浓度随时间的变化由以下反应决定:通过两个单体的非指令性连接自发生成二聚体;游离单体与聚合物链末端的连接,从而使它们能够延长其长度;长度超过长度阈值的聚合物通过模板指导合成催化其他聚合物的形成;以及所有物种的分解。我们发现,如果单体通量强度“低”(小于分解速率常数),二聚体是主要物种。在“高”通量(大于模板指导合成速率常数)下,最长的自我复制物种占主导。对于“中等”通量(在“低”和“高”之间),最短的自我复制聚合物是胜者。无论通量强度如何,所有聚合物物种都共存。

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