Hubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Wuhan University, Wuhan, China.
College of Computer Sciences, Wuhan University, Wuhan, China.
PLoS Comput Biol. 2021 Dec 29;17(12):e1009761. doi: 10.1371/journal.pcbi.1009761. eCollection 2021 Dec.
The origin of life involved complicated evolutionary processes. Computer modeling is a promising way to reveal relevant mechanisms. However, due to the limitation of our knowledge on prebiotic chemistry, it is usually difficult to justify parameter-setting for the modeling. Thus, typically, the studies were conducted in a reverse way: the parameter-space was explored to find those parameter values "supporting" a hypothetical scene (that is, leaving the parameter-justification a later job when sufficient knowledge is available). Exploring the parameter-space manually is an arduous job (especially when the modeling becomes complicated) and additionally, difficult to characterize as regular "Methods" in a paper. Here we show that a machine-learning-like approach may be adopted, automatically optimizing the parameters. With this efficient parameter-exploring approach, the evolutionary modeling on the origin of life would become much more powerful. In particular, based on this, it is expected that more near-reality (complex) models could be introduced, and thereby theoretical research would be more tightly associated with experimental investigation in this field-hopefully leading to significant steps forward in respect to our understanding on the origin of life.
生命的起源涉及复杂的进化过程。计算机建模是揭示相关机制的一种有前途的方法。然而,由于我们对前生物化学知识的限制,通常很难为建模设定参数。因此,研究通常以相反的方式进行:探索参数空间,以找到那些“支持”假设场景的参数值(也就是说,当有足够的知识时,将参数论证留到以后)。手动探索参数空间是一项艰巨的任务(特别是当建模变得复杂时),并且很难在论文中以常规的“方法”进行描述。在这里,我们表明可以采用类似于机器学习的方法来自动优化参数。通过这种高效的参数探索方法,生命起源的进化建模将变得更加强大。特别是,基于此,可以引入更接近现实(复杂)的模型,从而使理论研究更紧密地与该领域的实验研究相关联——有望在我们对生命起源的理解方面取得重大进展。