瑞士卡达尼奥半咸湖化学跃层中光合硫细菌的原位分析。
In situ analysis of phototrophic sulfur bacteria in the chemocline of meromictic Lake Cadagno (Switzerland).
作者信息
Tonolla M, Demarta A, Peduzzi R, Hahn D
机构信息
Cantonal Institute of Bacteriology, Microbial Ecology (University of Geneva), CH-6904 Lugano, Switzerland.
出版信息
Appl Environ Microbiol. 1999 Mar;65(3):1325-30. doi: 10.1128/AEM.65.3.1325-1330.1999.
Abstract
Comparative sequence analysis of a 16S rRNA gene clone library from the chemocline of the meromictic Lake Cadagno (Switzerland) revealed the presence of a diverse number of phototrophic sulfur bacteria. Sequences resembled those of rRNA of type strains Chromatium okenii DSM169 and Amoebobacter purpureus DSM4197, as well as those of four bacteria forming a tight cluster with A. purpureus DSM4197 and Lamprocystis roseopersicina DSM229. In situ hybridization with fluorescent (Cy3 labeled) oligonucleotide probes indicated that all large-celled phototrophic sulfur bacteria in the chemocline of Lake Cadagno were represented by C. okenii DSM169, while small-celled phototrophic sulfur bacteria consisted of four major populations with different distribution profiles in the chemocline indicating different ecophysiological adaptations.
摘要
对瑞士卡达尼奥半咸水湖化学分层带的16S rRNA基因克隆文库进行的比较序列分析表明，存在多种光合硫细菌。序列与奥氏着色菌DSM169型菌株和紫红红杆菌DSM4197的rRNA序列相似，也与四种细菌的序列相似，这四种细菌与紫红红杆菌DSM4197和玫瑰色发光囊菌DSM229形成紧密聚类。用荧光（Cy3标记）寡核苷酸探针进行原位杂交表明，卡达尼奥湖化学分层带中所有大细胞光合硫细菌均由奥氏着色菌DSM169代表，而小细胞光合硫细菌由四个主要种群组成，它们在化学分层带中具有不同的分布模式，表明具有不同的生态生理适应性。
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本文引用的文献
1
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2
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Appl Environ Microbiol. 1983 Nov;46(5):999-1006. doi: 10.1128/aem.46.5.999-1006.1983.
3
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Appl Environ Microbiol. 1998 Apr;64(4):1283-9. doi: 10.1128/AEM.64.4.1283-1289.1998.
4
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Appl Environ Microbiol. 1997 Sep;63(9):3367-73. doi: 10.1128/aem.63.9.3367-3373.1997.
5
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Appl Environ Microbiol. 1996 Apr;62(4):1405-15. doi: 10.1128/aem.62.4.1405-1415.1996.
6
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Appl Environ Microbiol. 1996 Apr;62(4):1391-404. doi: 10.1128/aem.62.4.1391-1404.1996.
7
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Appl Environ Microbiol. 1996 Jun;62(6):1998-2005. doi: 10.1128/aem.62.6.1998-2005.1996.
8
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Nucleic Acids Res. 1994 Nov 11;22(22):4673-80. doi: 10.1093/nar/22.22.4673.
9
Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli.大肠杆菌核糖体RNA操纵子的基因组织与一级结构
J Mol Biol. 1981 May 15;148(2):107-27. doi: 10.1016/0022-2836(81)90508-8.
10
The neighbor-joining method: a new method for reconstructing phylogenetic trees.邻接法：一种重建系统发育树的新方法。
Mol Biol Evol. 1987 Jul;4(4):406-25. doi: 10.1093/oxfordjournals.molbev.a040454.
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