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基于部分16S rDNA核苷酸序列推断的三种利用氨基酸的厌氧菌——食氨基月形单胞菌、“嗜氨基月形单胞菌”和嗜氨基真杆菌的系统发育关系,以及嗜氨基嗜热厌氧弧菌属新属、新组合和嗜氨基厌氧缪菌属新属、新组合的提议

Phylogenetic relationships of three amino-acid-utilizing anaerobes, Selenomonas acidaminovorans, 'Selenomonas acidaminophila' and Eubacterium acidaminophilum, as inferred from partial 16S rDNA nucleotide sequences and proposal of Thermanaerovibrio acidaminovorans gen. nov., comb. nov. and Anaeromusa acidaminophila gen. nov., comb. nov.

作者信息

Baena S, Fardeau M L, Woo T H, Ollivier B, Labat M, Patel B K

机构信息

Laboratoire ORSTOM de Microbiologie des Anaérobies, Université de Provence, Marseille, France.

出版信息

Int J Syst Bacteriol. 1999 Jul;49 Pt 3:969-74. doi: 10.1099/00207713-49-3-969.

Abstract

16S rRNA gene sequences of three previously described amino-acid-fermenting anaerobes, Selenomonas acidaminovorans, 'Selenomonas acidaminophila' and Eubacterium acidaminophilum, were determined. All three were found to cluster within the Clostridium and related genera of the subphylum of the Gram-positive bacteria. The thermophile, S. acidaminovorans, formed an individual line of descent and was equidistantly placed between Dethiosulfovibrio peptidovorans and Anaerobaculum thermoterrenum (similarity of 85%), both of which also form single lines of descent. 'S. acidaminophila' was related to Clostridium quercicolum, a member of cluster IX, with a similarity of 90%, whereas E. acidaminophilum was closely related to Clostridium litorale (similarity of 96%) as a member of cluster XI. Based on the phylogenetic data presented in this report and the phenotypic descriptions of these bacteria published previously, it is recommended that S. acidaminovorans be transferred to a new genus, Thermanaerovibrio gen. nov., as Thermanaerovibrio acidaminovorans comb. nov. and 'Selenomonas acidaminophila' be transferred to a new genus, Anaeromusa gen. nov., as Anaeromusa acidaminophila comb. nov. Though the transfer of E. acidaminophilum to a new taxon is justified, this is not recommended until the taxonomic status of all the members of cluster XI has been reviewed.

摘要

测定了三种先前描述的氨基酸发酵厌氧菌——食氨基月形单胞菌、“嗜氨基月形单胞菌”和嗜氨基真杆菌的16S rRNA基因序列。发现这三种菌都聚集在革兰氏阳性菌亚门的梭菌属及相关属内。嗜热菌食氨基月形单胞菌形成了一个单独的谱系,与肽脱硫弧菌和嗜热栖土厌氧杆菌等距排列(相似度为85%),这两种菌也都形成单独的谱系。“嗜氨基月形单胞菌”与簇IX的成员栎树梭菌相关,相似度为90%,而嗜氨基真杆菌作为簇XI的成员与海滨梭菌密切相关(相似度为96%)。根据本报告中呈现的系统发育数据以及先前发表的这些细菌的表型描述,建议将食氨基月形单胞菌转移到一个新属——嗜热厌氧弧菌属,新组合名为嗜热厌氧弧菌食氨基亚种;将“嗜氨基月形单胞菌”转移到一个新属——厌氧缪菌属,新组合名为厌氧缪菌嗜氨基亚种。虽然将嗜氨基真杆菌转移到一个新分类单元是合理的,但在对簇XI的所有成员的分类地位进行审查之前,不建议这样做。

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