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节杆菌属1-IN的异源四聚体肌氨酸氧化酶催化碳氢键断裂机制的动力学研究。

Kinetic studies of the mechanism of carbon-hydrogen bond breakage by the heterotetrameric sarcosine oxidase of Arthrobacter sp. 1-IN.

作者信息

Harris R J, Meskys R, Sutcliffe M J, Scrutton N S

机构信息

Department of Biochemistry and Department of Chemistry, University of Leicester, University Road, Leicester LE1 7RH, UK.

出版信息

Biochemistry. 2000 Feb 15;39(6):1189-98. doi: 10.1021/bi991941v.

Abstract

The reaction of heterotetrameric sarcosine oxidase (TSOX) of Arthrobactor sp. 1-IN has been studied by stopped-flow spectroscopy, with particular emphasis on the reduction of the enzyme by sarcosine. Expression of the cloned gene encoding TSOX in Escherichia coli enables the production of TSOX on a scale suitable for stopped-flow studies. Treatment of the enzyme with sulfite provides the means for selective formation of a flavin-sulfite adduct with the covalent 8alpha-(N(3)-histidyl)-FMN. Formation of the sulfite-flavin adduct suppresses internal electron transfer between the noncovalent FAD (site of sarcosine oxidation) and the covalent FMN (site of enzyme oxidation) and thus enables detailed characterization of the kinetics of FAD reduction by sarcosine using stopped-flow methods. The rate of FAD reduction displays a simple hyperbolic dependence on sarcosine concentration. Studies in the pH range 6.5-10 indicate there are no kinetically influential ionizations in the enzyme-substrate complex. A plot of the limiting rate of flavin reduction/the enzyme-substrate dissociation constant (k(lim)/K(d)) versus pH is bell-shaped and characterized by two macroscopic pK(a) values of 7.4 +/- 0.1 and 10.4 +/- 0.2: potential candidates for the two ionizable groups are discussed with reference to the structure of monomeric sarcosine oxidase (MSOX). The kinetic data are discussed with reference to potential mechanisms for the oxidation of amine molecules by flavoenzymes. Additionally, kinetic isotope effect studies of the rate of C-H bond breakage suggest that a ground-state quantum tunneling mechanism for H-transfer, facilitated by the low-frequency thermal motions of the protein molecule, accounts for C-H bond cleavage by TSOX. TSOX thus provides another example of C-H bond breakage by ground-state quantum tunneling, driven by protein dynamics [vibrationally enhanced ground-state quantum tunneling (VEGST)], for the oxidation of amines by enzymes.

摘要

已通过停流光谱法研究了节杆菌属1-IN的异源四聚体肌氨酸氧化酶(TSOX)的反应,特别着重于肌氨酸对该酶的还原作用。在大肠杆菌中克隆编码TSOX的基因,能够以适合停流研究的规模生产TSOX。用亚硫酸盐处理该酶,可选择性地形成与共价8α-(N(3)-组氨酰)-FMN的黄素-亚硫酸盐加合物。亚硫酸盐-黄素加合物的形成抑制了非共价FAD(肌氨酸氧化位点)与共价FMN(酶氧化位点)之间的内部电子转移,从而能够使用停流方法详细表征肌氨酸还原FAD的动力学。FAD还原速率对肌氨酸浓度呈现简单的双曲线依赖性。在pH值6.5 - 10范围内的研究表明,酶-底物复合物中不存在对动力学有影响的电离作用。黄素还原的极限速率/酶-底物解离常数(k(lim)/K(d))对pH作图呈钟形,其特征为两个宏观pK(a)值,分别为7.4 ± 0.1和10.4 ± 0.2:结合单体肌氨酸氧化酶(MSOX)的结构讨论了两个可电离基团的潜在候选者。结合黄素酶氧化胺分子的潜在机制对动力学数据进行了讨论。此外,对C-H键断裂速率的动力学同位素效应研究表明,由蛋白质分子的低频热运动促进H转移的基态量子隧穿机制,解释了TSOX对C-H键的裂解作用。因此,TSOX提供了另一个通过基态量子隧穿实现C-H键断裂的例子,该过程由蛋白质动力学驱动[振动增强的基态量子隧穿(VEGST)],用于酶对胺的氧化。

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