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pH值和动力学同位素效应对N-甲基色氨酸氧化酶催化肌氨酸氧化的影响。

pH and kinetic isotope effects on sarcosine oxidation by N-methyltryptophan oxidase.

作者信息

Ralph Erik C, Fitzpatrick Paul F

机构信息

Department of Biochemistry and Biophysics, Texas A&M University, College Station, Texas 77843-2128, USA.

出版信息

Biochemistry. 2005 Mar 1;44(8):3074-81. doi: 10.1021/bi047716h.

Abstract

N-Methyltryptophan oxidase (MTOX), a flavoenzyme from Escherichia coli, catalyzes the oxidative demethylation of secondary amino acids such as N-methyltryptophan or N-methylglycine (sarcosine). MTOX is one of several flavin-dependent amine oxidases whose chemical mechanism is still debated. The kinetic properties of MTOX with the slow substrate sarcosine were determined. Initial rate data are well-described by the equation for a ping-pong kinetic mechanism, in that the V/K(O)()2 value is independent of the sarcosine concentration at all accessible concentrations of oxygen. The k(cat)/K(sarc) pH profile is bell-shaped, with pK(a) values of 8.8 and about 10; the latter value matches the pK(a) value of the substrate nitrogen. The k(cat) pH profile exhibits a single pK(a) value of 9.1 for a group that must be unprotonated for catalysis. There is no significant solvent isotope effect on the k(cat)/K(sarc) value. With N-methyl-(2)H(3)-glycine as the substrate, there is a pH-independent kinetic isotope effect on k(cat), k(cat)/K(sarc), and the rate constant for flavin reduction, with an average value of 7.2. Stopped-flow spectroscopy with both the protiated and deuterated substrate failed to detect any intermediates between the enzyme-substrate complex and the fully reduced enzyme. These results are used to evaluate proposed chemical mechanisms.

摘要

N-甲基色氨酸氧化酶(MTOX)是一种来自大肠杆菌的黄素酶,可催化二级氨基酸如N-甲基色氨酸或N-甲基甘氨酸(肌氨酸)的氧化脱甲基反应。MTOX是几种黄素依赖性胺氧化酶之一,其化学机制仍存在争议。测定了MTOX与缓慢底物肌氨酸的动力学性质。初始速率数据可以用乒乓动力学机制的方程很好地描述,因为在所有可达到的氧气浓度下,V/K(O)()2值与肌氨酸浓度无关。k(cat)/K(sarc)的pH曲线呈钟形,pK(a)值分别为8.8和约10;后一个值与底物氮的pK(a)值相匹配。k(cat)的pH曲线显示,对于催化必须未质子化的基团,其pK(a)值为9.1。在k(cat)/K(sarc)值上没有明显的溶剂同位素效应。以N-甲基-(2)H(3)-甘氨酸为底物时,在k(cat)、k(cat)/K(sarc)和黄素还原速率常数上存在与pH无关的动力学同位素效应,平均值为7.2。使用质子化和氘代底物的停流光谱法未能检测到酶-底物复合物和完全还原的酶之间的任何中间体。这些结果用于评估提出的化学机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6f83/1752209/2cdeeef09052/nihms-13116-0001.jpg

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