病毒基因组数据库：存储和分析来自完整病毒基因组的基因与蛋白质。

Viral Genome DataBase: storing and analyzing genes and proteins from complete viral genomes.

作者信息

Hiscock D, Upton C

机构信息

Department of Biochemistry and Microbiology, University of Victoria, PO Box 3055, Victoria, BC V8W 3P6, Canada.

出版信息

Bioinformatics. 2000 May;16(5):484-5. doi: 10.1093/bioinformatics/16.5.484.

DOI:10.1093/bioinformatics/16.5.484

PMID:10871272

Abstract

SUMMARY

The Viral Genome DataBase (VGDB) contains detailed information of the genes and predicted protein sequences from 15 completely sequenced genomes of large (&100 kb) viruses (2847 genes). The data that is stored includes DNA sequence, protein sequence, GenBank and user-entered notes, molecular weight (MW), isoelectric point (pI), amino acid content, A + T%, nucleotide frequency, dinucleotide frequency and codon use. The VGDB is a mySQL database with a user-friendly JAVA GUI. Results of queries can be easily sorted by any of the individual parameters.

AVAILABILITY

The software and additional figures and information are available at http://athena.bioc.uvic.ca/genomes/index.html .

摘要

病毒基因组数据库（VGDB）包含来自15个大型（≥100 kb）病毒（2847个基因）的完全测序基因组的基因和预测蛋白质序列的详细信息。所存储的数据包括DNA序列、蛋白质序列、GenBank和用户输入的注释、分子量（MW）、等电点（pI）、氨基酸含量、A+T%、核苷酸频率、二核苷酸频率和密码子使用情况。VGDB是一个具有用户友好型JAVA图形用户界面的MySQL数据库。查询结果可通过任何单个参数轻松排序。