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小鼠基因表达数据库（GXD）。

The Mouse Gene Expression Database (GXD).

作者信息

Ringwald M, Eppig J T, Begley D A, Corradi J P, McCright I J, Hayamizu T F, Hill D P, Kadin J A, Richardson J E

机构信息

The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.

出版信息

Nucleic Acids Res. 2001 Jan 1;29(1):98-101. doi: 10.1093/nar/29.1.98.

DOI:10.1093/nar/29.1.98
PMID:11125060
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC29814/
Abstract

The Gene Expression Database (GXD) is a community resource of gene expression information for the laboratory mouse. By combining the different types of expression data, GXD aims to provide increasingly complete information about the expression profiles of genes in different mouse strains and mutants, thus enabling valuable insights into the molecular networks that underlie normal development and disease. GXD is integrated with the Mouse Genome Database (MGD). Extensive interconnections with sequence databases and with databases from other species, and the development and use of shared controlled vocabularies extend GXD's utility for the analysis of gene expression information. GXD is accessible through the Mouse Genome Informatics web site at http://www.informatics.jax.org/ or directly at http://www.informatics.jax.org/menus/expression_menu. shtml.

摘要

基因表达数据库（GXD）是实验室小鼠基因表达信息的社区资源。通过整合不同类型的表达数据，GXD旨在提供关于不同小鼠品系和突变体中基因表达谱的日益完整的信息，从而有助于深入了解正常发育和疾病背后的分子网络。GXD与小鼠基因组数据库（MGD）整合。与序列数据库以及其他物种的数据库广泛互联，以及共享受控词汇表的开发和使用扩展了GXD在基因表达信息分析方面的效用。可通过小鼠基因组信息网站http://www.informatics.jax.org/或直接通过http://www.informatics.jax.org/menus/expression_menu.shtml访问GXD。

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本文引用的文献

1
The Mouse Genome Database (MGD): integration nexus for the laboratory mouse.
Nucleic Acids Res. 2001 Jan 1;29(1):91-4. doi: 10.1093/nar/29.1.91.
2
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
Nat Genet. 2000 May;25(1):25-9. doi: 10.1038/75556.
3
GXD: integrated access to gene expression data for the laboratory mouse.
Trends Genet. 2000 Apr;16(4):188-90. doi: 10.1016/s0168-9525(00)01983-1.
4
A three-dimensional model of the mouse at embryonic day 9.
Dev Biol. 1999 Dec 15;216(2):457-68. doi: 10.1006/dbio.1999.9500.
5
GXD: a Gene Expression Database for the laboratory mouse: current status and recent enhancements. The Gene Expresison Database group.
Nucleic Acids Res. 2000 Jan 1;28(1):115-9. doi: 10.1093/nar/28.1.115.
6
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.
Nucleic Acids Res. 2000 Jan 1;28(1):45-8. doi: 10.1093/nar/28.1.45.
7
The genome sequence DataBase.
Nucleic Acids Res. 2000 Jan 1;28(1):31-2. doi: 10.1093/nar/28.1.31.
8
DNA data bank of Japan (DDBJ) in collaboration with mass sequencing teams.
Nucleic Acids Res. 2000 Jan 1;28(1):24-6. doi: 10.1093/nar/28.1.24.
9
The EMBL nucleotide sequence database.
Nucleic Acids Res. 2000 Jan 1;28(1):19-23. doi: 10.1093/nar/28.1.19.
10
GenBank.
Nucleic Acids Res. 2000 Jan 1;28(1):15-8. doi: 10.1093/nar/28.1.15.

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