Skalicky J J, Mills J L, Sharma S, Szyperski T
Contribution from the Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260, USA.
J Am Chem Soc. 2001 Jan 24;123(3):388-97. doi: 10.1021/ja003220l.
We have characterized, for the first time, motional modes of a protein dissolved in supercooled water: the flipping kinetics of phenylalanyl and tyrosinyl rings of the 6 kDa protein BPTI have been investigated by NMR at temperatures between -3 and -16.5 degrees C. At T = -15 degrees C, the ring-flipping rate constants of Tyr 23, Tyr 35, and Phe 45 are smaller than 2 s(-1), i.e., flip-broadening of aromatic NMR lines is reduced beyond detection and averaging of NOEs through ring-flipping is abolished. This allows neat detection of distinct NOE sets for the individual aromatic (1)H spins. In contrast, the rings of Phe 4, Tyr 10, Tyr 21, Phe 22, and Phe 33 are flipping rapidly on the chemical shift time scale with rate constants being in the range from approximately 10(2) to 10(5) s(-1) even at T = -15 degrees C. Line width measurements in 2D [(1)H,(1)H]-NOESY showed that flipping of the Phe 4 and Phe 33 rings is, however, slowed to an extent that the onset of associated line broadening in the fast exchange limit is registered. The reduced ring-flipping rate constant of Phe 45 in supercooled water allowed very precise determination of Eyring activation enthalpy and entropy from cross relaxation suppressed 2D [(1)H,(1)H]-exchange spectroscopy. This yielded DeltaH = 14 +/- 0.5 kcal.mol(-1) and DeltaS = -4 +/- 1 cal.mol(-1).K(-1), i.e., values close to those previously derived by Wagner and Wüthrich for the temperature range from 4 to 72 degrees C (DeltaH = 16 +/- 1 kcal.mol(-1) and DeltaS = 6 +/- 2 cal.mol(-1).K(-1)). The preservation of the so far uniquely low value for DeltaS indicates that the distribution of internal motional modes associated with the ring flip of Phe 45 is hardly affected by lowering T well below 0 degrees C. Hence, if a globular protein does not cold denature, aromatic flipping rates, and thus likely also the rates of other conformational and/or chemical exchange processes occurring in supercooled water, can be expected to be well estimated from activation parameters obtained at ambient T. This is of keen interest to predict the impact of supercooling for future studies of biological macromolecules, and shows that our approach enables one to conduct NMR-based structural biology at below 0 degrees C in an unperturbed aqueous environment. A search of the BioMagResBank indicated that the overwhelming majority of the Phe and Tyr rings (>95%) are flipping rapidly on the chemical shift time scale at ambient T, while our data for BPTI and activation parameters available for ring-flipping in Iso-2-cytochrome c reveal that in these smaller proteins a total of six out of seventeen rings ( approximately 35%) are "frozen in" at T = -15 degrees C. This suggests that a large fraction of Tyr and Phe rings in globular proteins that are flipping rapidly on the chemical shift time scale at ambient T can be effectively slowed in supercooled water. The present investigation demonstrates that supercooling of protein solutions appears to be an effective means to (i) harvest potential benefits of stalled ring-flipping for refining NMR solution structures, (ii) recruit additional aromatic rings for investigating protein dynamics, and (iii) use multiple slowly flipping rings to probe cold denaturation. The implications for NMR-based structural biology in supercooled water are addressed.
通过核磁共振研究了6 kDa蛋白质BPTI中苯丙氨酰基和酪氨酰基环的翻转动力学,温度范围为-3至-16.5摄氏度。在T = -15摄氏度时,Tyr 23、Tyr 35和Phe 45的环翻转速率常数小于2 s(-1),即芳香族核磁共振谱线的翻转展宽减小到无法检测的程度,并且通过环翻转对核Overhauser效应(NOE)的平均作用被消除。这使得能够清晰地检测到各个芳香族(1)H自旋的不同NOE集。相比之下,即使在T = -15摄氏度时,Phe 4、Tyr 10、Tyr 21、Phe 22和Phe 33的环在化学位移时间尺度上仍快速翻转,速率常数范围约为10(2)至10(5) s(-1)。二维[(1)H,(1)H]-NOESY中的线宽测量表明,Phe 4和Phe 33环的翻转速度减慢到一定程度,以至于在快速交换极限下相关线展宽的起始情况被记录下来。过冷水中Phe 45环翻转速率常数的降低使得能够通过交叉弛豫抑制的二维[(1)H,(1)H]-交换光谱非常精确地测定艾林活化焓和熵。结果得到ΔH = 14 ± 0.5 kcal.mol(-1)和ΔS = -4 ± 1 cal.mol(-1).K(-1),即这些值与瓦格纳和伍特里希之前在4至72摄氏度温度范围内得出的值相近(ΔH = 16 ± 1 kcal.mol(-1)和ΔS = 6 ± 2 cal.mol(-1).K(-1))。ΔS迄今为止唯一的低值得以保留,这表明与Phe 45环翻转相关的内部运动模式分布几乎不受将温度降至远低于0摄氏度的影响。因此,如果一种球状蛋白质不会发生冷变性,那么可以预期从在环境温度下获得的活化参数能够很好地估计过冷水中芳香族翻转速率,以及其他可能发生的构象和/或化学交换过程的速率。这对于预测过冷对未来生物大分子研究的影响具有重要意义,并且表明我们的方法能够在低于0摄氏度的无扰动水性环境中进行基于核磁共振的结构生物学研究。对BioMagResBank的搜索表明,在环境温度下,绝大多数苯丙氨酸和酪氨酸环(>95%)在化学位移时间尺度上快速翻转,而我们关于BPTI的数据以及可用于Iso-2-细胞色素c中环翻转的活化参数表明,在这些较小的蛋白质中,17个环中有6个(约35%)在T = -15摄氏度时“冻结”。这表明在环境温度下在化学位移时间尺度上快速翻转的球状蛋白质中,很大一部分酪氨酸和苯丙氨酸环在过冷水中可以有效地减慢翻转速度。本研究表明,蛋白质溶液的过冷似乎是一种有效的手段,用于(i)获取环翻转停滞的潜在益处以优化核磁共振溶液结构,(ii)利用额外的芳香族环来研究蛋白质动力学,以及(iii)使用多个缓慢翻转的环来探测冷变性。文中讨论了其对过冷水中基于核磁共振的结构生物学的影响。