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糖肽类抗生素的生物合成:专用氨基酸单体(S)-3,5-二羟基苯甘氨酸的酶促组装。

Glycopeptide antibiotic biosynthesis: enzymatic assembly of the dedicated amino acid monomer (S)-3,5-dihydroxyphenylglycine.

作者信息

Chen H, Tseng C C, Hubbard B K, Walsh C T

机构信息

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.

出版信息

Proc Natl Acad Sci U S A. 2001 Dec 18;98(26):14901-6. doi: 10.1073/pnas.221582098.

DOI:10.1073/pnas.221582098
PMID:11752437
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC64956/
Abstract

Four proteins, DpgA-D, required for the biosynthesis by actinomycetes of the nonproteinogenic amino acid monomer (S)-3,5-dihydroxyphenylglycine (Dpg), that is a crosslinking site in the maturation of vancomycin and teicoplanin antibiotic scaffolds, were expressed in Escherichia coli, purified in soluble form, and assayed for enzymatic activity. DpgA is a type III polyketide synthase, converting four molecules of malonyl-CoA to 3,5-dihydroxyphenylacetyl-CoA (DPA-CoA) and three free coenzyme A (CoASH) products. Almost no turnover was observed for DpgA until DpgB was added, producing a net k(cat) of 1-2 min(-1) at a 3:1 ratio of DpgB:DpgA. Addition of DpgD gave a further 2-fold rate increase. DpgC had the unusual catalytic capacity to convert DPA-CoA to 3,5-dihydroxyphenylglyoxylate, which is a transamination away from Dpg. DpgC performed a net CH(2) to C=O four-electron oxidation on the Calpha of DPA-CoA and hydrolyzed the thioester linkage with a k(cat) of 10 min(-1). Phenylacetyl-CoA was also processed, to phenylglyoxylate, but with about 500-fold lower k(cat)/K(M). DpgC showed no activity in anaerobic incubations, suggesting an oxygenase function, but had no detectable bound organic cofactors or metals. A weak enoyl-CoA hydratase activity was detected for both DpgB and DpgD.

摘要

放线菌生物合成非蛋白质ogenic氨基酸单体(S)-3,5-二羟基苯甘氨酸(Dpg)所需的四种蛋白质DpgA-D在大肠杆菌中表达,以可溶形式纯化,并测定其酶活性。Dpg是万古霉素和替考拉宁抗生素支架成熟过程中的交联位点。DpgA是一种III型聚酮合酶,将四分子丙二酰辅酶A转化为3,5-二羟基苯乙酰辅酶A(DPA-CoA)和三个游离辅酶A(CoASH)产物。在添加DpgB之前,几乎没有观察到DpgA的周转,以DpgB:DpgA为3:1的比例时,净催化常数k(cat)为1-2 min(-1)。添加DpgD使反应速率进一步提高2倍。DpgC具有将DPA-CoA转化为3,5-二羟基苯乙二醛的异常催化能力,这是一种与Dpg不同的转氨反应。DpgC对DPA-CoA的α-碳原子进行了净CH(2)到C=O的四电子氧化,并以10 min(-1)的催化常数水解硫酯键。苯乙酰辅酶A也被加工成苯乙二醛,但催化常数/米氏常数约低500倍。DpgC在厌氧培养中没有活性,表明其具有加氧酶功能,但没有可检测到的结合有机辅因子或金属。DpgB和DpgD都检测到微弱的烯酰辅酶A水合酶活性。

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本文引用的文献

1
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Chem Commun (Camb). 2001 Oct 21(20):2156-7. doi: 10.1039/b106638b.
2
Mechanism of Rubisco: The Carbamate as General Base.核酮糖-1,5-二磷酸羧化酶/加氧酶的作用机制:作为通用碱的氨基甲酸盐
Chem Rev. 1998 Apr 2;98(2):549-562. doi: 10.1021/cr970010r.
3
Discovery of a new bacterial polyketide biosynthetic pathway.一种新的细菌聚酮化合物生物合成途径的发现。
Chembiochem. 2001 Jan 8;2(1):35-8. doi: 10.1002/1439-7633(20010105)2:1<35::AID-CBIC35>3.0.CO;2-1.
4
A polyketide synthase in glycopeptide biosynthesis: the biosynthesis of the non-proteinogenic amino acid (S)-3,5-dihydroxyphenylglycine.糖肽生物合成中的聚酮合酶:非蛋白质氨基酸(S)-3,5-二羟基苯甘氨酸的生物合成。
J Biol Chem. 2001 Oct 19;276(42):38370-7. doi: 10.1074/jbc.M106580200. Epub 2001 Aug 8.
5
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Structure. 2001 Jul 3;9(7):547-57. doi: 10.1016/s0969-2126(01)00616-5.
6
Molecular cloning and sequence analysis of the complestatin biosynthetic gene cluster.制癌菌素生物合成基因簇的分子克隆与序列分析。
Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8548-53. doi: 10.1073/pnas.151246498. Epub 2001 Jul 10.
7
Tandem action of glycosyltransferases in the maturation of vancomycin and teicoplanin aglycones: novel glycopeptides.糖基转移酶在万古霉素和替考拉宁苷元成熟过程中的串联作用:新型糖肽
Biochemistry. 2001 Apr 17;40(15):4745-55. doi: 10.1021/bi010050w.
8
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Acc Chem Res. 2001 Feb;34(2):145-57. doi: 10.1021/ar000053l.
9
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